Strain Fitness in Pantoea sp. MT58 around IAI47_13085

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,763,880	-		IAI47_13080	0.59	+4.0
2,763,880	-		IAI47_13080	0.59	-0.6
2,763,918	+		IAI47_13080	0.62	-2.0
2,763,918	+		IAI47_13080	0.62	+1.4
2,763,919	-		IAI47_13080	0.62	-1.5
2,764,027	-		IAI47_13080	0.68	-1.2
2,764,045	+		IAI47_13080	0.69	+2.0
2,764,045	+		IAI47_13080	0.69	+0.6
2,764,072	+		IAI47_13080	0.71	+3.7
2,764,073	-		IAI47_13080	0.71	+1.4
2,764,073	-		IAI47_13080	0.71	-2.0
2,764,102	+		IAI47_13080	0.73	+3.7
2,764,102	+		IAI47_13080	0.73	+0.0
2,764,103	-		IAI47_13080	0.73	+1.7
2,764,136	-		IAI47_13080	0.75	-1.6
2,764,178	+		IAI47_13080	0.77	+1.9
2,764,178	+		IAI47_13080	0.77	+1.0
2,764,178	+		IAI47_13080	0.77	+0.6
2,764,179	-		IAI47_13080	0.77	-0.8
2,764,179	-		IAI47_13080	0.77	+1.4
2,764,179	-		IAI47_13080	0.77	-2.8
2,764,179	-		IAI47_13080	0.77	-0.7
2,764,179	-		IAI47_13080	0.77	+1.0
2,764,180	+		IAI47_13080	0.77	+1.8
2,764,180	+		IAI47_13080	0.77	-1.6
2,764,180	+		IAI47_13080	0.77	-1.7
2,764,180	+		IAI47_13080	0.77	-0.2
2,764,180	+		IAI47_13080	0.77	-1.2
2,764,180	+		IAI47_13080	0.77	-1.2
2,764,181	-		IAI47_13080	0.77	-0.6
2,764,181	-		IAI47_13080	0.77	+1.9
2,764,232	-		IAI47_13080	0.80	-1.4
2,764,242	+		IAI47_13080	0.81	+1.5
2,764,243	-		IAI47_13080	0.81	-1.3
2,764,243	-		IAI47_13080	0.81	-2.5
2,764,243	-		IAI47_13080	0.81	-1.0
2,764,243	-		IAI47_13080	0.81	-1.3
2,764,248	+		IAI47_13080	0.81	-2.1
2,764,249	-		IAI47_13080	0.81	-0.9
2,764,249	-		IAI47_13080	0.81	+2.2
2,764,267	+		IAI47_13080	0.82	+0.1
2,764,267	+		IAI47_13080	0.82	+1.4
2,764,268	-		IAI47_13080	0.82	-2.1
2,764,268	-		IAI47_13080	0.82	-2.2
2,764,302	+		IAI47_13080	0.84	+0.3
2,764,302	+		IAI47_13080	0.84	-0.5
2,764,303	-		IAI47_13080	0.84	-0.4
2,764,303	-		IAI47_13080	0.84	+3.9
2,764,303	-		IAI47_13080	0.84	+2.0
2,764,346	+		IAI47_13080	0.87	+2.1
2,764,346	+		IAI47_13080	0.87	-3.0
2,764,346	+		IAI47_13080	0.87	+1.2
2,764,347	-		IAI47_13080	0.87	-1.7
2,764,347	-		IAI47_13080	0.87	-1.6
2,764,347	-		IAI47_13080	0.87	+0.2
2,764,347	-		IAI47_13080	0.87	+2.4
2,764,361	+		IAI47_13080	0.88	+1.3
2,764,361	+		IAI47_13080	0.88	-2.0
2,764,361	+		IAI47_13080	0.88	-2.1
2,764,361	+		IAI47_13080	0.88	-1.2
2,764,361	+		IAI47_13080	0.88	+0.1
2,764,361	+		IAI47_13080	0.88	-0.7
2,764,361	+		IAI47_13080	0.88	-1.1
2,764,361	+		IAI47_13080	0.88	-0.6
2,764,361	+		IAI47_13080	0.88	-0.2
2,764,361	+		IAI47_13080	0.88	+1.5
2,764,361	+		IAI47_13080	0.88	+4.1
2,764,361	+		IAI47_13080	0.88	-1.1
2,764,362	-		IAI47_13080	0.88	+0.6
2,764,362	-		IAI47_13080	0.88	+0.3
2,764,362	-		IAI47_13080	0.88	+2.6
2,764,362	-		IAI47_13080	0.88	+0.0
2,764,362	-		IAI47_13080	0.88	-0.6
2,764,362	-		IAI47_13080	0.88	-2.0
2,764,362	-		IAI47_13080	0.88	+0.3
2,764,362	-		IAI47_13080	0.88	-0.2
2,764,362	-		IAI47_13080	0.88	-0.4
2,764,362	-		IAI47_13080	0.88	+3.4
2,764,362	-		IAI47_13080	0.88	-0.6
2,764,362	-		IAI47_13080	0.88	+0.3
2,764,438	+				+0.7
2,764,490	+				-0.7
2,764,490	+				-0.6
2,764,490	+				-1.1
2,764,490	+				+1.0
2,764,490	+				+2.1
2,764,490	+				+3.1
2,764,491	-				+1.8
2,764,491	-				-0.9
2,764,491	-				-1.5
2,764,491	-				-2.3
2,764,491	-				+1.3
2,764,506	+				+2.6
2,764,506	+				+1.4
2,764,506	+				-0.4
2,764,506	+				-0.1
2,764,506	+				+2.1
2,764,506	+				+1.1
2,764,506	+				+0.0
2,764,506	+				-0.2
2,764,507	-				-0.6
2,764,507	-				-0.6
2,764,507	-				+2.6
2,764,507	-				+5.4
2,764,507	-				-0.3
2,764,507	-				-1.5
2,764,507	-				+0.6
2,764,507	-				+1.5
2,764,591	+				+0.6
2,764,593	+				+2.2
2,764,593	+				+1.0
2,764,593	+				+0.8
2,764,593	+				-0.4
2,764,594	-				-1.4
2,764,597	+				+2.5
2,764,597	+				-0.2
2,764,598	-				+1.8
2,764,598	-				+0.6
2,764,604	+				-0.4
2,764,604	+				+1.0
2,764,610	+				+2.4
2,764,610	+				-2.8
2,764,610	+				+1.0
2,764,611	-				+3.4
2,764,611	-				+0.3
2,764,613	+				+3.0
2,764,613	+				-1.1
2,764,613	+				+2.4
2,764,613	+				+1.4
2,764,613	+				-1.1
2,764,613	+				+2.5
2,764,614	-				+1.6
2,764,614	-				+0.8
2,764,614	-				+3.6
2,764,614	-				-2.3
2,764,614	-				+0.3
2,764,614	-				+3.4
2,764,685	-				-0.7
2,764,685	-				+0.3
2,764,685	-				+2.1
2,764,832	+				-0.3
2,764,832	+				+1.7
2,764,838	-				+2.6
2,764,841	+				-0.8
2,764,842	-				+0.6
2,764,842	-				-1.9
2,764,859	+				+1.6
2,764,859	+				+2.6
2,764,860	-				+2.6
2,764,894	+				+2.6
2,764,895	-				+2.6
2,764,932	+		IAI47_13085	0.11	-0.6
2,764,932	+		IAI47_13085	0.11	+0.0
2,764,932	+		IAI47_13085	0.11	-1.4
2,764,935	+		IAI47_13085	0.11	+0.6
2,764,935	+		IAI47_13085	0.11	+2.6
2,764,935	+		IAI47_13085	0.11	+0.4
2,764,935	+		IAI47_13085	0.11	-3.1
2,764,936	-		IAI47_13085	0.11	-0.4
2,764,936	-		IAI47_13085	0.11	+0.8
2,764,936	-		IAI47_13085	0.11	+0.3
2,764,936	-		IAI47_13085	0.11	-2.0
2,764,936	-		IAI47_13085	0.11	+0.8
2,764,951	+		IAI47_13085	0.14	+1.9
2,764,951	+		IAI47_13085	0.14	-1.4
2,764,952	-		IAI47_13085	0.14	-1.0
2,764,986	+		IAI47_13085	0.19	+3.3
2,764,986	+		IAI47_13085	0.19	+0.6
2,764,986	+		IAI47_13085	0.19	-0.6
2,764,986	+		IAI47_13085	0.19	-1.6
2,764,987	-		IAI47_13085	0.20	+0.4
2,765,072	+		IAI47_13085	0.34	+3.0
2,765,073	-		IAI47_13085	0.34	-0.7
2,765,144	+		IAI47_13085	0.46	+0.3
2,765,178	-		IAI47_13085	0.51	-0.9
2,765,225	-		IAI47_13085	0.59	-1.9
2,765,254	-		IAI47_13085	0.64	-0.7
2,765,254	-		IAI47_13085	0.64	-2.3
2,765,254	-		IAI47_13085	0.64	-0.7
2,765,266	-		IAI47_13085	0.66	-1.9
2,765,266	-		IAI47_13085	0.66	-2.3
2,765,324	-		IAI47_13085	0.75	+1.2
2,765,324	-		IAI47_13085	0.75	+0.0
2,765,324	-		IAI47_13085	0.75	+0.6
2,765,387	+		IAI47_13085	0.86	+2.5
2,765,387	+		IAI47_13085	0.86	-0.6
2,765,387	+		IAI47_13085	0.86	-1.9
2,765,387	+		IAI47_13085	0.86	+0.9
2,765,388	-		IAI47_13085	0.86	-0.6
2,765,471	+				-1.5
2,765,472	-				+1.4
2,765,486	+				+1.6
2,765,528	+				-1.2
2,765,528	+				+3.9
2,765,528	+				-0.2
2,765,528	+				-0.6
2,765,529	-				-2.6
2,765,529	-				-1.8
2,765,529	-				+2.3
2,765,684	+				-1.3
2,765,687	+				-1.4
2,765,687	+				+1.0
2,765,766	+				-0.2
2,765,811	+				+1.0
2,765,812	-				+1.9
2,765,812	-				+3.8
2,765,812	-				-1.6
2,765,812	-				-1.9
2,765,812	-				-1.0
2,765,812	-				-0.9
2,765,816	+				+0.6
2,765,817	-				-1.8
2,765,893	-				+0.1
2,765,893	-				+0.9
2,766,221	+		IAI47_13090	0.27	+3.9
2,766,222	-		IAI47_13090	0.28	+2.4
2,766,222	-		IAI47_13090	0.28	-1.1
2,766,230	+		IAI47_13090	0.28	+3.9
2,766,311	+		IAI47_13090	0.35	+1.6
2,766,311	+		IAI47_13090	0.35	-1.9
2,766,312	-		IAI47_13090	0.35	+0.3
2,766,331	+		IAI47_13090	0.37	+2.0
2,766,331	+		IAI47_13090	0.37	-0.4
2,766,361	+		IAI47_13090	0.39	-1.0
2,766,361	+		IAI47_13090	0.39	-0.9
2,766,361	+		IAI47_13090	0.39	-0.2
2,766,361	+		IAI47_13090	0.39	-0.2
2,766,361	+		IAI47_13090	0.39	+1.1
2,766,379	+		IAI47_13090	0.41	+1.6
2,766,379	+		IAI47_13090	0.41	+1.1
2,766,379	+		IAI47_13090	0.41	-0.7
2,766,380	-		IAI47_13090	0.41	+0.0
2,766,392	-		IAI47_13090	0.42	+3.2
2,766,451	+		IAI47_13090	0.47	+0.3
2,766,451	+		IAI47_13090	0.47	+0.0
2,766,451	+		IAI47_13090	0.47	-1.0
2,766,451	+		IAI47_13090	0.47	-1.3
2,766,452	-		IAI47_13090	0.47	-0.6
2,766,458	-		IAI47_13090	0.47	+0.0