Strain Fitness in Pantoea sp. MT58 around IAI47_12760

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,687,543	-				+0.7
2,687,549	-				+1.6
2,687,559	+				+1.6
2,687,560	-				-1.4
2,687,561	+				+1.1
2,687,561	+				-2.8
2,687,561	+				+1.0
2,687,562	-				+1.6
2,687,563	+				-1.9
2,687,563	+				+1.0
2,687,563	+				-1.9
2,687,565	+				+2.7
2,687,650	+				-1.9
2,687,651	-				-0.1
2,687,684	+				+1.5
2,687,687	+				-1.6
2,687,694	+				-0.6
2,687,695	-				-0.9
2,687,695	-				+1.1
2,687,701	+				-1.1
2,687,707	+				-1.8
2,687,802	+				+4.1
2,687,802	+				-1.2
2,687,802	+				-0.2
2,687,808	+				+0.4
2,687,808	+				-1.1
2,687,809	-				+1.6
2,687,824	-				+0.6
2,687,831	-				+0.6
2,687,831	-				-0.7
2,687,846	+				+3.1
2,687,847	-				-1.9
2,687,847	-				+2.6
2,687,875	+				+1.0
2,687,907	+				-1.6
2,687,908	-				-1.9
2,687,909	+				+1.6
2,687,910	-				+1.6
2,687,937	+				-1.1
2,687,937	+				+3.0
2,687,942	+				+0.3
2,687,961	+		IAI47_12760	0.11	-2.3
2,687,962	-		IAI47_12760	0.11	-1.3
2,688,015	+		IAI47_12760	0.16	+0.0
2,688,015	+		IAI47_12760	0.16	-2.8
2,688,016	-		IAI47_12760	0.16	-1.9
2,688,032	+		IAI47_12760	0.18	-0.7
2,688,032	+		IAI47_12760	0.18	+1.6
2,688,050	+		IAI47_12760	0.19	+0.0
2,688,084	+		IAI47_12760	0.22	-1.9
2,688,084	+		IAI47_12760	0.22	+0.0
2,688,084	+		IAI47_12760	0.22	+1.0
2,688,085	-		IAI47_12760	0.22	+0.3
2,688,085	-		IAI47_12760	0.22	+0.6
2,688,085	-		IAI47_12760	0.22	+0.0
2,688,085	-		IAI47_12760	0.22	+0.3
2,688,085	-		IAI47_12760	0.22	+0.6
2,688,101	+		IAI47_12760	0.24	+0.3
2,688,102	-		IAI47_12760	0.24	-0.4
2,688,190	-		IAI47_12760	0.32	+0.0
2,688,197	+		IAI47_12760	0.32	+0.0
2,688,198	-		IAI47_12760	0.32	-0.7
2,688,198	-		IAI47_12760	0.32	-0.7
2,688,201	+		IAI47_12760	0.33	-0.2
2,688,201	+		IAI47_12760	0.33	-1.7
2,688,201	+		IAI47_12760	0.33	-2.1
2,688,201	+		IAI47_12760	0.33	-1.5
2,688,201	+		IAI47_12760	0.33	+1.1
2,688,201	+		IAI47_12760	0.33	+2.6
2,688,201	+		IAI47_12760	0.33	+0.0
2,688,201	+		IAI47_12760	0.33	+0.6
2,688,202	-		IAI47_12760	0.33	+0.6
2,688,202	-		IAI47_12760	0.33	+0.3
2,688,202	-		IAI47_12760	0.33	-1.2
2,688,202	-		IAI47_12760	0.33	-0.9
2,688,213	+		IAI47_12760	0.34	+1.2
2,688,214	-		IAI47_12760	0.34	+0.0
2,688,267	+		IAI47_12760	0.39	-3.0
2,688,276	-		IAI47_12760	0.39	-3.7
2,688,293	+		IAI47_12760	0.41	+1.6
2,688,293	+		IAI47_12760	0.41	+1.0
2,688,294	-		IAI47_12760	0.41	-1.6
2,688,312	+		IAI47_12760	0.43	+1.8
2,688,312	+		IAI47_12760	0.43	+0.6
2,688,340	+		IAI47_12760	0.45	-1.2
2,688,341	-		IAI47_12760	0.45	-0.9
2,688,375	-		IAI47_12760	0.48	-2.3
2,688,375	-		IAI47_12760	0.48	-1.6
2,688,435	+		IAI47_12760	0.53	-1.0
2,688,435	+		IAI47_12760	0.53	-0.1
2,688,435	+		IAI47_12760	0.53	+1.6
2,688,435	+		IAI47_12760	0.53	-0.4
2,688,435	+		IAI47_12760	0.53	-2.6
2,688,435	+		IAI47_12760	0.53	+0.3
2,688,435	+		IAI47_12760	0.53	-0.2
2,688,435	+		IAI47_12760	0.53	-0.7
2,688,435	+		IAI47_12760	0.53	+1.0
2,688,435	+		IAI47_12760	0.53	-1.1
2,688,436	-		IAI47_12760	0.54	-0.2
2,688,436	-		IAI47_12760	0.54	+1.8
2,688,436	-		IAI47_12760	0.54	-1.6
2,688,436	-		IAI47_12760	0.54	-0.4
2,688,436	-		IAI47_12760	0.54	+1.6
2,688,436	-		IAI47_12760	0.54	-0.6
2,688,436	-		IAI47_12760	0.54	-0.9
2,688,436	-		IAI47_12760	0.54	-0.1
2,688,436	-		IAI47_12760	0.54	-1.0
2,688,436	-		IAI47_12760	0.54	+1.0
2,688,437	+		IAI47_12760	0.54	-1.4
2,688,437	+		IAI47_12760	0.54	-0.9
2,688,437	+		IAI47_12760	0.54	-1.0
2,688,437	+		IAI47_12760	0.54	-2.7
2,688,438	-		IAI47_12760	0.54	-1.0
2,688,438	-		IAI47_12760	0.54	+1.0
2,688,471	+		IAI47_12760	0.57	+1.0
2,688,471	+		IAI47_12760	0.57	-2.0
2,688,471	+		IAI47_12760	0.57	+1.0
2,688,472	-		IAI47_12760	0.57	-1.3
2,688,527	+		IAI47_12760	0.62	+0.4
2,688,527	+		IAI47_12760	0.62	+0.0
2,688,527	+		IAI47_12760	0.62	+0.0
2,688,579	+		IAI47_12760	0.66	-0.3
2,688,579	+		IAI47_12760	0.66	+0.3
2,688,579	+		IAI47_12760	0.66	-2.0
2,688,579	+		IAI47_12760	0.66	-0.6
2,688,579	+		IAI47_12760	0.66	+0.0
2,688,579	+		IAI47_12760	0.66	+4.2
2,688,579	+		IAI47_12760	0.66	-0.6
2,688,597	+		IAI47_12760	0.68	-0.5
2,688,597	+		IAI47_12760	0.68	-1.8
2,688,597	+		IAI47_12760	0.68	-0.7
2,688,612	+		IAI47_12760	0.69	+0.3
2,688,612	+		IAI47_12760	0.69	-0.6
2,688,612	+		IAI47_12760	0.69	-1.5
2,688,613	-		IAI47_12760	0.69	+0.0
2,688,626	+		IAI47_12760	0.70	+1.6
2,688,633	-		IAI47_12760	0.71	+0.3
2,688,633	-		IAI47_12760	0.71	-1.4
2,688,720	+		IAI47_12760	0.79	-0.4
2,688,756	+		IAI47_12760	0.82	+0.1
2,688,756	+		IAI47_12760	0.82	-1.6
2,688,756	+		IAI47_12760	0.82	+0.6
2,688,756	+		IAI47_12760	0.82	-1.3
2,688,756	+		IAI47_12760	0.82	-1.9
2,688,757	-		IAI47_12760	0.82	-0.7
2,688,757	-		IAI47_12760	0.82	-2.3
2,688,757	-		IAI47_12760	0.82	+1.2
2,688,757	-		IAI47_12760	0.82	-1.4
2,688,757	-		IAI47_12760	0.82	-1.5
2,688,757	-		IAI47_12760	0.82	-0.2
2,688,767	+				+2.6
2,688,809	+		IAI47_12760	0.87	-0.4
2,688,809	+		IAI47_12760	0.87	+1.6
2,688,813	+		IAI47_12760	0.87	-1.7
2,688,813	+		IAI47_12760	0.87	+1.4
2,688,813	+		IAI47_12760	0.87	-0.4
2,688,813	+		IAI47_12760	0.87	-2.0
2,688,813	+		IAI47_12760	0.87	+1.0
2,688,814	-		IAI47_12760	0.87	-1.6
2,688,834	+		IAI47_12760	0.89	-1.5
2,688,834	+		IAI47_12760	0.89	+4.3
2,688,835	-		IAI47_12760	0.89	+0.6
2,688,835	-		IAI47_12760	0.89	+0.0
2,688,837	+		IAI47_12760	0.89	+0.3
2,688,838	-		IAI47_12760	0.89	+1.6
2,688,857	+				+1.0
2,688,857	+				-1.6
2,688,857	+				+1.0
2,688,857	+				+0.0
2,688,862	-				+1.0
2,688,871	-				+0.0
2,688,897	-				+1.0
2,688,897	-				-2.0
2,688,928	+				+0.6
2,688,929	-				+0.3
2,688,934	+				+0.6
2,688,934	+				-2.6
2,688,945	+				+3.4
2,688,946	-				+0.3
2,688,954	+				-0.2
2,688,954	+				-1.1
2,688,955	-				+0.2
2,688,987	+				-1.6
2,688,988	-				-0.4
2,689,004	+				+0.0
2,689,044	+				-1.5
2,689,045	-				+0.2
2,689,045	-				+1.1
2,689,091	-				+7.9
2,689,143	-				+0.6
2,689,175	+				-2.2
2,689,176	-				-1.1
2,689,226	-				-1.0
2,689,226	-				-1.9
2,689,226	-				+0.7
2,689,296	-				+2.5
2,689,296	-				-1.1
2,689,296	-				+3.6
2,689,337	-		IAI47_12765	0.12	-0.7
2,689,352	+		IAI47_12765	0.14	-1.1
2,689,352	+		IAI47_12765	0.14	-0.6
2,689,352	+		IAI47_12765	0.14	+0.0
2,689,353	-		IAI47_12765	0.14	-2.0
2,689,478	-		IAI47_12765	0.24	-0.4
2,689,509	+		IAI47_12765	0.27	-0.2
2,689,509	+		IAI47_12765	0.27	-1.7
2,689,510	-		IAI47_12765	0.27	+1.9
2,689,582	+		IAI47_12765	0.33	+0.5
2,689,583	-		IAI47_12765	0.33	-0.2
2,689,600	+		IAI47_12765	0.34	+2.5
2,689,628	+		IAI47_12765	0.37	+3.3
2,689,628	+		IAI47_12765	0.37	-0.4
2,689,629	-		IAI47_12765	0.37	+3.3
2,689,634	+		IAI47_12765	0.37	-1.5
2,689,634	+		IAI47_12765	0.37	-0.7
2,689,634	+		IAI47_12765	0.37	-0.2
2,689,634	+		IAI47_12765	0.37	+0.4
2,689,635	-		IAI47_12765	0.37	+3.4
2,689,635	-		IAI47_12765	0.37	+1.6
2,689,637	+		IAI47_12765	0.38	-1.0
2,689,637	+		IAI47_12765	0.38	-2.7
2,689,637	+		IAI47_12765	0.38	+1.4
2,689,637	+		IAI47_12765	0.38	-1.5
2,689,637	+		IAI47_12765	0.38	-0.2
2,689,637	+		IAI47_12765	0.38	+1.9
2,689,638	-		IAI47_12765	0.38	-2.0
2,689,638	-		IAI47_12765	0.38	+3.9
2,689,638	-		IAI47_12765	0.38	-0.4
2,689,654	+		IAI47_12765	0.39	+0.6
2,689,654	+		IAI47_12765	0.39	-1.6
2,689,655	-		IAI47_12765	0.39	+0.5
2,689,829	+		IAI47_12765	0.54	-1.3
2,689,919	+		IAI47_12765	0.61	-0.9
2,689,919	+		IAI47_12765	0.61	+3.1
2,689,919	+		IAI47_12765	0.61	-0.6
2,689,920	-		IAI47_12765	0.61	-1.4
2,689,920	-		IAI47_12765	0.61	+0.6
2,689,940	+		IAI47_12765	0.63	+0.4
2,689,940	+		IAI47_12765	0.63	-2.5
2,689,940	+		IAI47_12765	0.63	+3.8
2,689,940	+		IAI47_12765	0.63	+0.6
2,689,941	-		IAI47_12765	0.63	+0.0
2,689,941	-		IAI47_12765	0.63	+1.6
2,689,941	-		IAI47_12765	0.63	-0.6
2,689,941	-		IAI47_12765	0.63	-1.6
2,689,942	+		IAI47_12765	0.63	-0.4
2,689,943	-		IAI47_12765	0.63	-1.1
2,689,943	-		IAI47_12765	0.63	+1.6