Strain Fitness in Pantoea sp. MT58 around IAI47_12390

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,614,339	+				-0.8
2,614,339	+				+3.2
2,614,340	-				+3.6
2,614,340	-				-0.9
2,614,340	-				-1.6
2,614,340	-				-0.2
2,614,340	-				-0.8
2,614,479	+		IAI47_12385	0.14	-0.9
2,614,511	+		IAI47_12385	0.18	+1.9
2,614,512	-		IAI47_12385	0.18	-1.8
2,614,525	+		IAI47_12385	0.20	+2.7
2,614,525	+		IAI47_12385	0.20	+1.2
2,614,525	+		IAI47_12385	0.20	-0.9
2,614,526	-		IAI47_12385	0.20	+1.8
2,614,526	-		IAI47_12385	0.20	+2.0
2,614,526	-		IAI47_12385	0.20	+1.0
2,614,565	-		IAI47_12385	0.26	+2.7
2,614,603	+		IAI47_12385	0.31	+0.2
2,614,603	+		IAI47_12385	0.31	+1.6
2,614,603	+		IAI47_12385	0.31	+1.3
2,614,603	+		IAI47_12385	0.31	-1.6
2,614,604	-		IAI47_12385	0.31	-1.1
2,614,604	-		IAI47_12385	0.31	+0.2
2,614,606	+		IAI47_12385	0.31	+2.6
2,614,606	+		IAI47_12385	0.31	-0.0
2,614,606	+		IAI47_12385	0.31	-1.0
2,614,607	-		IAI47_12385	0.31	+1.0
2,614,607	-		IAI47_12385	0.31	+2.5
2,614,607	-		IAI47_12385	0.31	-1.0
2,614,607	-		IAI47_12385	0.31	+2.4
2,614,607	-		IAI47_12385	0.31	+1.4
2,614,607	-		IAI47_12385	0.31	+2.7
2,614,607	-		IAI47_12385	0.31	+2.7
2,614,607	-		IAI47_12385	0.31	-1.2
2,614,688	+		IAI47_12385	0.42	+0.2
2,614,799	+		IAI47_12385	0.58	+1.3
2,614,799	+		IAI47_12385	0.58	-0.0
2,614,799	+		IAI47_12385	0.58	-1.7
2,614,800	-		IAI47_12385	0.58	-2.6
2,614,832	+		IAI47_12385	0.62	-1.0
2,614,832	+		IAI47_12385	0.62	+1.4
2,614,832	+		IAI47_12385	0.62	+0.6
2,614,833	-		IAI47_12385	0.62	-0.0
2,614,833	-		IAI47_12385	0.62	-0.2
2,614,833	-		IAI47_12385	0.62	-1.0
2,614,833	-		IAI47_12385	0.62	+2.2
2,614,833	-		IAI47_12385	0.62	+2.2
2,614,838	+		IAI47_12385	0.63	-0.9
2,614,839	-		IAI47_12385	0.63	-1.2
2,614,847	+		IAI47_12385	0.64	-1.1
2,614,847	+		IAI47_12385	0.64	-0.9
2,614,848	-		IAI47_12385	0.64	-2.0
2,614,848	-		IAI47_12385	0.64	-1.4
2,614,874	+		IAI47_12385	0.68	-1.1
2,614,926	+		IAI47_12385	0.75	+0.2
2,614,926	+		IAI47_12385	0.75	+3.2
2,614,974	+		IAI47_12385	0.82	-1.8
2,614,978	+		IAI47_12385	0.82	-0.2
2,614,978	+		IAI47_12385	0.82	-1.0
2,614,979	-		IAI47_12385	0.82	+1.8
2,614,979	-		IAI47_12385	0.82	+2.6
2,614,979	-		IAI47_12385	0.82	-0.8
2,614,979	-		IAI47_12385	0.82	+0.8
2,614,979	-		IAI47_12385	0.82	-0.6
2,614,979	-		IAI47_12385	0.82	+1.6
2,615,002	-		IAI47_12385	0.85	+3.1
2,615,058	+				-1.2
2,615,095	+				+1.0
2,615,128	+				+4.2
2,615,128	+				-3.0
2,615,128	+				+1.6
2,615,128	+				+3.8
2,615,128	+				+0.1
2,615,128	+				-0.8
2,615,128	+				-0.9
2,615,128	+				+0.6
2,615,128	+				-0.2
2,615,128	+				+4.3
2,615,128	+				+0.2
2,615,129	-				-1.0
2,615,129	-				+2.6
2,615,129	-				+1.1
2,615,129	-				-1.0
2,615,129	-				-1.4
2,615,129	-				-2.0
2,615,209	-				+2.9
2,615,225	+				-1.5
2,615,233	+				+0.8
2,615,233	+				-0.0
2,615,234	-				-0.9
2,615,234	-				-0.0
2,615,252	-				-0.0
2,615,292	+				+1.3
2,615,298	+				+1.3
2,615,298	+				-0.6
2,615,318	+				+3.4
2,615,318	+				-1.3
2,615,372	+				+0.5
2,615,373	-				+0.3
2,615,468	-		IAI47_12390	0.34	-2.5
2,615,482	+		IAI47_12390	0.37	-0.0
2,615,482	+		IAI47_12390	0.37	+1.7
2,615,482	+		IAI47_12390	0.37	+2.8
2,615,482	+		IAI47_12390	0.37	-1.3
2,615,482	+		IAI47_12390	0.37	-2.1
2,615,482	+		IAI47_12390	0.37	-0.2
2,615,482	+		IAI47_12390	0.37	-1.2
2,615,482	+		IAI47_12390	0.37	-1.8
2,615,483	-		IAI47_12390	0.38	-0.4
2,615,483	-		IAI47_12390	0.38	-0.8
2,615,483	-		IAI47_12390	0.38	+1.6
2,615,483	-		IAI47_12390	0.38	+1.0
2,615,483	-		IAI47_12390	0.38	+4.3
2,615,483	-		IAI47_12390	0.38	+1.7
2,615,483	-		IAI47_12390	0.38	+1.8
2,615,487	-		IAI47_12390	0.39	+2.9
2,615,487	-		IAI47_12390	0.39	+1.0
2,615,487	-		IAI47_12390	0.39	-1.7
2,615,535	+		IAI47_12390	0.51	-1.2
2,615,535	+		IAI47_12390	0.51	-0.0
2,615,535	+		IAI47_12390	0.51	-0.9
2,615,535	+		IAI47_12390	0.51	+0.3
2,615,535	+		IAI47_12390	0.51	+3.1
2,615,535	+		IAI47_12390	0.51	+0.2
2,615,536	-		IAI47_12390	0.51	+1.6
2,615,536	-		IAI47_12390	0.51	-1.1
2,615,536	-		IAI47_12390	0.51	-0.4
2,615,536	-		IAI47_12390	0.51	+4.7
2,615,576	+		IAI47_12390	0.62	-1.8
2,615,609	+		IAI47_12390	0.70	-0.2
2,615,646	-		IAI47_12390	0.80	-0.3
2,615,646	-		IAI47_12390	0.80	-0.4
2,615,677	-		IAI47_12390	0.88	+1.1
2,615,723	+				-0.0
2,615,723	+				-2.0
2,615,724	-				+0.6
2,615,750	-				+0.6
2,615,788	+				-1.0
2,615,788	+				+0.2
2,615,794	+				+2.0
2,615,795	-				+3.0
2,615,795	-				+0.0
2,615,795	-				-1.3
2,615,837	+				+2.4
2,615,837	+				+1.0
2,615,837	+				-0.6
2,615,838	-				+3.0
2,615,838	-				-2.3
2,615,849	+				-0.4
2,615,850	-				-0.2
2,615,859	+				-0.1
2,615,860	-				+0.2
2,615,860	-				+2.6
2,615,860	-				+1.8
2,615,869	+				+1.6
2,615,869	+				+2.6
2,615,869	+				+0.2
2,615,869	+				-2.0
2,615,869	+				+1.4
2,615,869	+				-0.8
2,615,869	+				+1.2
2,615,869	+				+0.6
2,615,869	+				+0.6
2,615,869	+				+0.7
2,615,869	+				+0.2
2,615,870	-				+2.2
2,615,870	-				-1.3
2,615,870	-				-3.0
2,615,870	-				+3.4
2,615,870	-				-1.4
2,615,870	-				+0.4
2,615,870	-				+0.5
2,615,870	-				+2.0
2,615,873	+				+0.7
2,615,873	+				-0.2
2,615,874	-				+1.0
2,615,874	-				-1.8
2,615,874	-				+2.5
2,615,874	-				-0.9
2,615,874	-				+1.9
2,615,875	+				-3.6
2,615,875	+				-1.0
2,615,875	+				-1.3
2,615,876	-				+4.0
2,615,890	+				+0.5
2,615,890	+				+1.1
2,615,890	+				+2.0
2,615,890	+				-2.4
2,615,891	-				+1.6
2,615,912	+				-1.4
2,615,967	+				+1.0
2,615,968	-				+3.2
2,615,968	-				+2.6
2,616,036	+				+0.9
2,616,037	-				-0.4
2,616,133	-		IAI47_12395	0.10	+2.2
2,616,141	+		IAI47_12395	0.11	-1.0
2,616,141	+		IAI47_12395	0.11	+3.7
2,616,142	-		IAI47_12395	0.11	+0.2
2,616,185	+		IAI47_12395	0.14	+2.6
2,616,186	-		IAI47_12395	0.14	-0.4
2,616,186	-		IAI47_12395	0.14	+1.6
2,616,189	+		IAI47_12395	0.14	-1.5
2,616,189	+		IAI47_12395	0.14	-0.0
2,616,189	+		IAI47_12395	0.14	+0.1
2,616,189	+		IAI47_12395	0.14	-3.1
2,616,189	+		IAI47_12395	0.14	-0.3
2,616,189	+		IAI47_12395	0.14	+2.3
2,616,190	-		IAI47_12395	0.14	-0.4
2,616,291	+		IAI47_12395	0.22	-1.6
2,616,297	+		IAI47_12395	0.22	-0.0
2,616,297	+		IAI47_12395	0.22	+3.2
2,616,297	+		IAI47_12395	0.22	-1.9
2,616,297	+		IAI47_12395	0.22	+1.0
2,616,298	-		IAI47_12395	0.22	+1.0
2,616,518	+		IAI47_12395	0.38	+2.1
2,616,519	-		IAI47_12395	0.38	+2.0
2,616,519	-		IAI47_12395	0.38	-1.5
2,616,556	+		IAI47_12395	0.41	+5.4
2,616,556	+		IAI47_12395	0.41	+0.1
2,616,596	+		IAI47_12395	0.44	-1.1
2,616,597	-		IAI47_12395	0.44	-1.7
2,616,597	-		IAI47_12395	0.44	+2.6
2,616,631	+		IAI47_12395	0.46	+1.0
2,616,631	+		IAI47_12395	0.46	+0.0
2,616,631	+		IAI47_12395	0.46	+0.8
2,616,632	-		IAI47_12395	0.46	+2.8
2,616,701	+		IAI47_12395	0.51	-1.2