Strain Fitness in Pantoea sp. MT58 around IAI47_12200

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,580,392	+		IAI47_12190	0.63	-2.5
2,580,392	+		IAI47_12190	0.63	+1.3
2,580,393	-		IAI47_12190	0.63	-0.4
2,580,508	+		IAI47_12190	0.75	+0.2
2,580,508	+		IAI47_12190	0.75	-0.3
2,580,508	+		IAI47_12190	0.75	-0.6
2,580,567	+		IAI47_12190	0.82	-1.0
2,580,568	-		IAI47_12190	0.82	-0.2
2,580,705	+				+1.0
2,580,722	+				+2.1
2,580,722	+				+1.6
2,580,722	+				+4.6
2,580,722	+				+0.4
2,580,722	+				+0.3
2,580,722	+				+0.6
2,580,722	+				-1.9
2,580,723	-				-1.5
2,580,723	-				+1.0
2,580,723	-				+5.2
2,580,723	-				+0.0
2,580,723	-				+3.3
2,580,726	+				-0.5
2,580,727	-				-2.1
2,580,727	-				-1.1
2,580,727	-				-2.4
2,580,727	-				+2.1
2,580,727	-				-2.3
2,580,727	-				+0.0
2,580,727	-				-0.2
2,580,727	-				+2.3
2,580,727	-				+1.5
2,580,727	-				-0.2
2,580,727	-				+2.9
2,580,804	+		IAI47_12195	0.11	-1.5
2,580,804	+		IAI47_12195	0.11	-0.2
2,580,804	+		IAI47_12195	0.11	-0.4
2,580,805	-		IAI47_12195	0.11	+0.6
2,580,885	+		IAI47_12195	0.23	+0.3
2,580,885	+		IAI47_12195	0.23	+0.4
2,580,885	+		IAI47_12195	0.23	-2.3
2,580,886	-		IAI47_12195	0.23	+0.6
2,580,886	-		IAI47_12195	0.23	-1.3
2,580,886	-		IAI47_12195	0.23	+1.6
2,580,886	-		IAI47_12195	0.23	+1.4
2,581,116	+		IAI47_12195	0.59	+0.6
2,581,133	+		IAI47_12195	0.62	+0.0
2,581,133	+		IAI47_12195	0.62	-1.5
2,581,134	-		IAI47_12195	0.62	-1.1
2,581,134	-		IAI47_12195	0.62	+2.6
2,581,141	+		IAI47_12195	0.63	-1.2
2,581,225	+		IAI47_12195	0.77	+2.7
2,581,225	+		IAI47_12195	0.77	-0.5
2,581,226	-		IAI47_12195	0.77	-1.1
2,581,250	+		IAI47_12195	0.80	+3.4
2,581,261	-		IAI47_12195	0.82	-1.5
2,581,261	-		IAI47_12195	0.82	-0.2
2,581,295	+		IAI47_12195	0.87	-1.2
2,581,339	+				+5.2
2,581,340	-				-1.8
2,581,360	+				-0.4
2,581,427	+				+0.6
2,581,427	+				+3.0
2,581,427	+				+1.8
2,581,427	+				-2.9
2,581,428	-				-2.1
2,581,428	-				+3.5
2,581,428	-				+0.3
2,581,466	+		IAI47_12200	0.13	+1.5
2,581,466	+		IAI47_12200	0.13	+2.0
2,581,467	-		IAI47_12200	0.13	+1.0
2,581,467	-		IAI47_12200	0.13	-1.5
2,581,467	-		IAI47_12200	0.13	-1.4
2,581,467	-		IAI47_12200	0.13	-2.2
2,581,467	-		IAI47_12200	0.13	+2.0
2,581,467	-		IAI47_12200	0.13	-1.0
2,581,474	-		IAI47_12200	0.14	+4.8
2,581,548	+		IAI47_12200	0.27	+2.0
2,581,548	+		IAI47_12200	0.27	-0.5
2,581,548	+		IAI47_12200	0.27	-1.4
2,581,571	-		IAI47_12200	0.30	+0.5
2,581,571	-		IAI47_12200	0.30	+2.4
2,581,588	+		IAI47_12200	0.33	+2.0
2,581,588	+		IAI47_12200	0.33	-0.8
2,581,588	+		IAI47_12200	0.33	-1.6
2,581,588	+		IAI47_12200	0.33	-1.6
2,581,588	+		IAI47_12200	0.33	+0.3
2,581,588	+		IAI47_12200	0.33	+0.6
2,581,589	-		IAI47_12200	0.34	+0.9
2,581,589	-		IAI47_12200	0.34	+1.6
2,581,589	-		IAI47_12200	0.34	-0.7
2,581,589	-		IAI47_12200	0.34	-1.5
2,581,590	+		IAI47_12200	0.34	-1.9
2,581,591	-		IAI47_12200	0.34	+1.8
2,581,591	-		IAI47_12200	0.34	-2.6
2,581,591	-		IAI47_12200	0.34	+1.7
2,581,591	-		IAI47_12200	0.34	-0.7
2,581,657	-		IAI47_12200	0.45	+0.0
2,581,666	-		IAI47_12200	0.47	+2.6
2,581,666	-		IAI47_12200	0.47	+2.9
2,581,666	-		IAI47_12200	0.47	-0.7
2,581,666	-		IAI47_12200	0.47	-0.4
2,581,666	-		IAI47_12200	0.47	-1.0
2,581,666	-		IAI47_12200	0.47	+0.8
2,581,718	+		IAI47_12200	0.55	+3.6
2,581,718	+		IAI47_12200	0.55	-1.8
2,581,718	+		IAI47_12200	0.55	-0.8
2,581,747	+		IAI47_12200	0.60	-1.8
2,581,747	+		IAI47_12200	0.60	-1.8
2,581,748	-		IAI47_12200	0.60	-0.8
2,581,752	+		IAI47_12200	0.61	+0.6
2,581,752	+		IAI47_12200	0.61	-2.9
2,581,752	+		IAI47_12200	0.61	-2.2
2,581,752	+		IAI47_12200	0.61	+4.2
2,581,752	+		IAI47_12200	0.61	+1.7
2,581,752	+		IAI47_12200	0.61	+2.5
2,581,753	-		IAI47_12200	0.61	+1.6
2,581,753	-		IAI47_12200	0.61	-1.0
2,581,771	+		IAI47_12200	0.64	+2.6
2,581,771	+		IAI47_12200	0.64	-0.1
2,581,771	+		IAI47_12200	0.64	-1.1
2,581,771	+		IAI47_12200	0.64	+0.0
2,581,771	+		IAI47_12200	0.64	-3.0
2,581,771	+		IAI47_12200	0.64	+3.0
2,581,771	+		IAI47_12200	0.64	-0.2
2,581,771	+		IAI47_12200	0.64	+2.4
2,581,771	+		IAI47_12200	0.64	-0.8
2,581,771	+		IAI47_12200	0.64	+2.4
2,581,771	+		IAI47_12200	0.64	-1.0
2,581,772	-		IAI47_12200	0.64	-0.7
2,581,772	-		IAI47_12200	0.64	+0.6
2,581,772	-		IAI47_12200	0.64	+0.6
2,581,772	-		IAI47_12200	0.64	+3.8
2,581,772	-		IAI47_12200	0.64	-0.2
2,581,772	-		IAI47_12200	0.64	+0.9
2,581,772	-		IAI47_12200	0.64	+3.5
2,581,878	+		IAI47_12200	0.82	+0.3
2,581,878	+		IAI47_12200	0.82	+1.0
2,581,878	+		IAI47_12200	0.82	-2.8
2,581,879	-		IAI47_12200	0.83	-1.5
2,581,881	+		IAI47_12200	0.83	+0.8
2,581,881	+		IAI47_12200	0.83	-1.0
2,581,882	-		IAI47_12200	0.83	+3.3
2,581,882	-		IAI47_12200	0.83	+0.6
2,581,882	-		IAI47_12200	0.83	-1.1
2,581,882	-		IAI47_12200	0.83	-1.3
2,581,882	-		IAI47_12200	0.83	+1.6
2,581,934	-				-0.7
2,582,038	+				+2.2
2,582,039	-				+3.9
2,582,039	-				+3.3
2,582,039	-				+1.3
2,582,039	-				+1.9
2,582,040	+				+2.0
2,582,041	-				+4.1
2,582,108	+				-1.0
2,582,108	+				+2.9
2,582,108	+				-0.5
2,582,109	-				+1.2
2,582,142	-				-0.8
2,582,192	-				-1.4
2,582,192	-				-2.8
2,582,204	-				-0.6
2,582,248	+				-2.1
2,582,254	+				-1.6
2,582,254	+				-0.4
2,582,290	+				-0.4
2,582,290	+				+0.3
2,582,290	+				+0.0
2,582,290	+				+0.0
2,582,290	+				-1.5
2,582,290	+				+1.0
2,582,290	+				+2.3
2,582,290	+				+1.6
2,582,291	-				+5.2
2,582,291	-				-1.2
2,582,291	-				+1.8
2,582,291	-				-1.4
2,582,291	-				+0.6
2,582,291	-				-0.4
2,582,292	+				-1.2
2,582,292	+				-1.8
2,582,292	+				-0.4
2,582,292	+				+1.0
2,582,293	-				+1.9
2,582,293	-				-0.7
2,582,293	-				+3.4
2,582,293	-				-0.4
2,582,293	-				+3.2
2,582,293	-				-1.7
2,582,293	-				+2.6
2,582,293	-				-0.6
2,582,293	-				-2.5
2,582,293	-				-0.7
2,582,293	-				+0.0
2,582,293	-				-0.8
2,582,296	+				+0.7
2,582,296	+				+0.6
2,582,296	+				-0.2
2,582,296	+				+1.2
2,582,296	+				-1.6
2,582,296	+				+1.2
2,582,296	+				-2.5
2,582,296	+				+1.0
2,582,297	-				-0.3
2,582,297	-				+1.2
2,582,297	-				+1.5
2,582,297	-				+0.3
2,582,297	-				-0.4
2,582,297	-				-2.2
2,582,297	-				+1.0
2,582,297	-				-2.5
2,582,297	-				+1.6
2,582,297	-				+1.4
2,582,375	+		IAI47_12205	0.15	+4.5
2,582,375	+		IAI47_12205	0.15	-1.9
2,582,375	+		IAI47_12205	0.15	-2.1
2,582,375	+		IAI47_12205	0.15	-1.1
2,582,467	-		IAI47_12205	0.29	+1.2
2,582,467	-		IAI47_12205	0.29	+2.6
2,582,472	+		IAI47_12205	0.29	-1.4
2,582,472	+		IAI47_12205	0.29	+1.1
2,582,473	-		IAI47_12205	0.30	-0.8
2,582,473	-		IAI47_12205	0.30	-0.7
2,582,473	-		IAI47_12205	0.30	-1.0
2,582,482	+		IAI47_12205	0.31	+0.0
2,582,482	+		IAI47_12205	0.31	-1.0
2,582,482	+		IAI47_12205	0.31	+3.9
2,582,482	+		IAI47_12205	0.31	+1.0
2,582,483	-		IAI47_12205	0.31	+1.8
2,582,483	-		IAI47_12205	0.31	-0.8
2,582,483	-		IAI47_12205	0.31	+3.0
2,582,483	-		IAI47_12205	0.31	-1.0
2,582,483	-		IAI47_12205	0.31	+1.4
2,582,483	-		IAI47_12205	0.31	+0.5
2,582,556	+		IAI47_12205	0.42	-2.2
2,582,556	+		IAI47_12205	0.42	-0.8
2,582,557	-		IAI47_12205	0.43	-1.4
2,582,557	-		IAI47_12205	0.43	+2.6
2,582,557	-		IAI47_12205	0.43	-1.3
2,582,557	-		IAI47_12205	0.43	+0.5
2,582,562	+		IAI47_12205	0.43	+2.0
2,582,562	+		IAI47_12205	0.43	+1.1
2,582,562	+		IAI47_12205	0.43	-0.7
2,582,562	+		IAI47_12205	0.43	+0.2
2,582,562	+		IAI47_12205	0.43	+1.7
2,582,562	+		IAI47_12205	0.43	-1.5
2,582,562	+		IAI47_12205	0.43	-0.7
2,582,562	+		IAI47_12205	0.43	+3.1
2,582,562	+		IAI47_12205	0.43	-1.9
2,582,562	+		IAI47_12205	0.43	-1.0
2,582,562	+		IAI47_12205	0.43	-0.7
2,582,562	+		IAI47_12205	0.43	+1.0
2,582,562	+		IAI47_12205	0.43	-2.5
2,582,563	-		IAI47_12205	0.44	+3.4
2,582,563	-		IAI47_12205	0.44	-0.2
2,582,563	-		IAI47_12205	0.44	-2.5
2,582,563	-		IAI47_12205	0.44	+2.8
2,582,563	-		IAI47_12205	0.44	+2.3
2,582,563	-		IAI47_12205	0.44	-1.6
2,582,563	-		IAI47_12205	0.44	-1.6
2,582,566	+		IAI47_12205	0.44	-1.0
2,582,566	+		IAI47_12205	0.44	+3.3
2,582,566	+		IAI47_12205	0.44	-0.6
2,582,566	+		IAI47_12205	0.44	+2.4
2,582,566	+		IAI47_12205	0.44	+2.6
2,582,566	+		IAI47_12205	0.44	-1.3
2,582,566	+		IAI47_12205	0.44	+2.8
2,582,566	+		IAI47_12205	0.44	-0.2
2,582,566	+		IAI47_12205	0.44	+0.8
2,582,566	+		IAI47_12205	0.44	-1.0
2,582,566	+		IAI47_12205	0.44	-0.8
2,582,566	+		IAI47_12205	0.44	+2.6
2,582,566	+		IAI47_12205	0.44	+1.6
2,582,566	+		IAI47_12205	0.44	+2.3
2,582,566	+		IAI47_12205	0.44	-1.2
2,582,566	+		IAI47_12205	0.44	+0.3
2,582,566	+		IAI47_12205	0.44	-1.1
2,582,566	+		IAI47_12205	0.44	+2.2
2,582,566	+		IAI47_12205	0.44	-0.2
2,582,567	-		IAI47_12205	0.44	+2.3
2,582,567	-		IAI47_12205	0.44	+1.0
2,582,567	-		IAI47_12205	0.44	-0.6
2,582,567	-		IAI47_12205	0.44	+0.3
2,582,567	-		IAI47_12205	0.44	-1.3
2,582,567	-		IAI47_12205	0.44	-1.8
2,582,567	-		IAI47_12205	0.44	+0.6
2,582,567	-		IAI47_12205	0.44	-0.6
2,582,567	-		IAI47_12205	0.44	+3.6
2,582,567	-		IAI47_12205	0.44	-0.2
2,582,567	-		IAI47_12205	0.44	+0.6
2,582,567	-		IAI47_12205	0.44	-3.3
2,582,567	-		IAI47_12205	0.44	-1.7
2,582,567	-		IAI47_12205	0.44	+0.6
2,582,567	-		IAI47_12205	0.44	-0.4
2,582,582	+		IAI47_12205	0.46	+1.5
2,582,583	-		IAI47_12205	0.47	+1.0
2,582,642	-		IAI47_12205	0.56	+2.3
2,582,750	+		IAI47_12205	0.72	+2.6
2,582,751	-		IAI47_12205	0.73	-1.6
2,582,799	+		IAI47_12205	0.80	-0.3
2,582,799	+		IAI47_12205	0.80	-0.4
2,582,799	+		IAI47_12205	0.80	+2.2
2,582,799	+		IAI47_12205	0.80	+1.0
2,582,800	-		IAI47_12205	0.80	+3.3
2,582,800	-		IAI47_12205	0.80	-2.7
2,582,880	+				-1.7
2,582,880	+				-0.2
2,582,880	+				+0.0
2,582,881	-				+2.1
2,582,881	-				-0.6
2,582,881	-				+0.2
2,582,881	-				-1.3
2,582,881	-				+0.3
2,582,886	+				-0.2
2,582,886	+				+3.6
2,582,886	+				+5.2
2,582,900	+				-0.2
2,582,900	+				+0.0
2,582,900	+				-0.2
2,582,900	+				-1.1
2,582,901	-				+3.0
2,582,918	+				+1.9
2,582,918	+				+1.8
2,582,918	+				+2.6
2,582,919	-				-0.6
2,582,919	-				-2.1
2,582,919	-				-0.2
2,582,919	-				-1.9
2,582,926	+				+0.0