Strain Fitness in Pantoea sp. MT58 around IAI47_08350

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,767,147	+		IAI47_08345	0.22	+2.3
1,767,148	-		IAI47_08345	0.22	-2.7
1,767,218	-		IAI47_08345	0.28	-2.4
1,767,218	-		IAI47_08345	0.28	-2.3
1,767,295	+		IAI47_08345	0.35	-0.3
1,767,296	-		IAI47_08345	0.35	-0.7
1,767,334	+		IAI47_08345	0.38	-2.2
1,767,334	+		IAI47_08345	0.38	+1.1
1,767,335	-		IAI47_08345	0.38	-1.5
1,767,341	-		IAI47_08345	0.39	+2.3
1,767,341	-		IAI47_08345	0.39	+0.2
1,767,353	-		IAI47_08345	0.40	+0.2
1,767,353	-		IAI47_08345	0.40	+0.9
1,767,380	+		IAI47_08345	0.42	-0.3
1,767,380	+		IAI47_08345	0.42	+1.0
1,767,380	+		IAI47_08345	0.42	+1.0
1,767,380	+		IAI47_08345	0.42	-1.0
1,767,381	-		IAI47_08345	0.42	+1.3
1,767,381	-		IAI47_08345	0.42	+1.5
1,767,381	-		IAI47_08345	0.42	+3.1
1,767,513	-		IAI47_08345	0.54	-0.8
1,767,513	-		IAI47_08345	0.54	+0.9
1,767,513	-		IAI47_08345	0.54	-0.7
1,767,533	+		IAI47_08345	0.55	+3.8
1,767,586	+		IAI47_08345	0.60	+2.1
1,767,586	+		IAI47_08345	0.60	+0.5
1,767,586	+		IAI47_08345	0.60	-0.8
1,767,586	+		IAI47_08345	0.60	-3.0
1,767,586	+		IAI47_08345	0.60	-1.0
1,767,586	+		IAI47_08345	0.60	-0.3
1,767,587	-		IAI47_08345	0.60	+1.2
1,767,587	-		IAI47_08345	0.60	+4.6
1,767,587	-		IAI47_08345	0.60	+2.8
1,767,587	-		IAI47_08345	0.60	+3.2
1,767,587	-		IAI47_08345	0.60	+3.6
1,767,587	-		IAI47_08345	0.60	-0.3
1,767,587	-		IAI47_08345	0.60	+2.1
1,767,587	-		IAI47_08345	0.60	-0.5
1,767,587	-		IAI47_08345	0.60	-0.1
1,767,587	-		IAI47_08345	0.60	+2.6
1,767,587	-		IAI47_08345	0.60	+2.1
1,767,587	-		IAI47_08345	0.60	-0.7
1,767,613	+		IAI47_08345	0.62	-1.0
1,767,613	+		IAI47_08345	0.62	-1.5
1,767,613	+		IAI47_08345	0.62	-0.8
1,767,710	+		IAI47_08345	0.71	-1.4
1,767,710	+		IAI47_08345	0.71	+1.9
1,767,711	-		IAI47_08345	0.71	-1.0
1,767,711	-		IAI47_08345	0.71	+1.4
1,767,728	+		IAI47_08345	0.72	+0.9
1,767,728	+		IAI47_08345	0.72	-1.4
1,767,728	+		IAI47_08345	0.72	-1.0
1,767,728	+		IAI47_08345	0.72	+2.3
1,767,728	+		IAI47_08345	0.72	+1.3
1,767,729	-		IAI47_08345	0.72	-0.7
1,767,729	-		IAI47_08345	0.72	-2.3
1,767,729	-		IAI47_08345	0.72	+2.5
1,767,858	+		IAI47_08345	0.84	-1.8
1,767,858	+		IAI47_08345	0.84	+2.1
1,767,858	+		IAI47_08345	0.84	-0.9
1,767,858	+		IAI47_08345	0.84	-0.0
1,767,859	-		IAI47_08345	0.84	+2.1
1,767,859	-		IAI47_08345	0.84	-2.7
1,767,859	-		IAI47_08345	0.84	-2.3
1,767,860	+		IAI47_08345	0.84	+3.8
1,767,860	+		IAI47_08345	0.84	-2.0
1,767,860	+		IAI47_08345	0.84	+2.7
1,767,860	+		IAI47_08345	0.84	+2.9
1,767,860	+		IAI47_08345	0.84	+4.3
1,767,860	+		IAI47_08345	0.84	-1.0
1,767,860	+		IAI47_08345	0.84	+1.7
1,767,861	-		IAI47_08345	0.84	-1.1
1,767,861	-		IAI47_08345	0.84	+2.2
1,767,861	-		IAI47_08345	0.84	-0.1
1,767,861	-		IAI47_08345	0.84	+1.2
1,767,861	-		IAI47_08345	0.84	+1.0
1,767,902	+		IAI47_08345	0.87	+0.2
1,767,902	+		IAI47_08345	0.87	-0.5
1,767,902	+		IAI47_08345	0.87	+0.0
1,767,902	+		IAI47_08345	0.87	+2.8
1,767,903	-		IAI47_08345	0.88	-1.0
1,767,903	-		IAI47_08345	0.88	-1.4
1,767,903	-		IAI47_08345	0.88	+3.9
1,767,903	-		IAI47_08345	0.88	-1.1
1,767,903	-		IAI47_08345	0.88	-1.3
1,767,903	-		IAI47_08345	0.88	+0.8
1,768,044	-				-2.7
1,768,046	+				-0.3
1,768,046	+				+0.3
1,768,046	+				-1.4
1,768,047	-				-0.8
1,768,064	-				+0.9
1,768,064	-				-2.3
1,768,069	+				+2.5
1,768,079	+				+2.0
1,768,085	+				-0.2
1,768,085	+				+0.9
1,768,085	+				-1.3
1,768,085	+				-0.1
1,768,086	-				-2.3
1,768,086	-				+2.4
1,768,086	-				+2.7
1,768,086	-				-0.0
1,768,099	+				-0.1
1,768,099	+				-0.8
1,768,099	+				+1.4
1,768,099	+				+1.5
1,768,115	-				+1.3
1,768,163	+				-2.0
1,768,164	-				-0.9
1,768,164	-				-1.5
1,768,187	+				-0.5
1,768,187	+				+1.1
1,768,187	+				+0.5
1,768,188	-				+0.2
1,768,188	-				-2.0
1,768,320	-		IAI47_08350	0.13	+4.7
1,768,427	+		IAI47_08350	0.19	-2.3
1,768,427	+		IAI47_08350	0.19	+1.3
1,768,427	+		IAI47_08350	0.19	-0.5
1,768,428	-		IAI47_08350	0.19	+1.1
1,768,451	+		IAI47_08350	0.20	-1.2
1,768,451	+		IAI47_08350	0.20	-1.2
1,768,452	-		IAI47_08350	0.20	+1.1
1,768,452	-		IAI47_08350	0.20	-0.5
1,768,452	-		IAI47_08350	0.20	-1.0
1,768,452	-		IAI47_08350	0.20	-2.1
1,768,457	+		IAI47_08350	0.20	+2.5
1,768,458	-		IAI47_08350	0.20	+1.5
1,768,479	-		IAI47_08350	0.21	+0.9
1,768,523	+		IAI47_08350	0.23	+3.1
1,768,620	+				+2.5
1,768,620	+		IAI47_08350	0.28	-0.1
1,768,620	+		IAI47_08350	0.28	+2.2
1,768,643	+		IAI47_08350	0.29	-2.0
1,768,733	+		IAI47_08350	0.33	+1.5
1,768,761	+		IAI47_08350	0.35	+4.4
1,768,761	+		IAI47_08350	0.35	+2.3
1,768,761	+		IAI47_08350	0.35	+2.4
1,768,762	-		IAI47_08350	0.35	+2.7
1,768,762	-		IAI47_08350	0.35	+4.3
1,768,762	-		IAI47_08350	0.35	+3.1
1,768,762	-		IAI47_08350	0.35	+1.5
1,768,763	+		IAI47_08350	0.35	+2.9
1,768,814	+		IAI47_08350	0.37	-0.5
1,768,815	-		IAI47_08350	0.37	-0.1
1,768,815	-		IAI47_08350	0.37	-1.6
1,768,836	-		IAI47_08350	0.38	+3.2
1,768,910	-		IAI47_08350	0.42	+3.0
1,768,964	+		IAI47_08350	0.44	+1.1
1,768,965	-		IAI47_08350	0.44	-1.3
1,768,973	-		IAI47_08350	0.45	-1.0
1,768,997	-		IAI47_08350	0.46	-1.3
1,769,135	+		IAI47_08350	0.52	-1.7
1,769,136	-		IAI47_08350	0.52	+0.9
1,769,157	+		IAI47_08350	0.53	+0.4
1,769,210	+		IAI47_08350	0.56	+3.8
1,769,211	-		IAI47_08350	0.56	+1.4
1,769,211	-		IAI47_08350	0.56	-0.1
1,769,220	-				-0.1
1,769,220	-		IAI47_08350	0.56	+2.6
1,769,220	-		IAI47_08350	0.56	+3.7
1,769,225	+		IAI47_08350	0.57	+1.6
1,769,226	-		IAI47_08350	0.57	-0.5
1,769,226	-		IAI47_08350	0.57	+0.9
1,769,270	+		IAI47_08350	0.59	+0.5
1,769,349	+		IAI47_08350	0.63	+1.3
1,769,349	+		IAI47_08350	0.63	+2.3
1,769,350	-		IAI47_08350	0.63	+2.1
1,769,371	+		IAI47_08350	0.64	-1.3
1,769,453	+		IAI47_08350	0.68	+2.8
1,769,454	-		IAI47_08350	0.68	+4.0
1,769,454	-		IAI47_08350	0.68	+0.9
1,769,489	+		IAI47_08350	0.69	-1.5
1,769,489	+		IAI47_08350	0.69	+1.9
1,769,490	-		IAI47_08350	0.69	-2.3
1,769,490	-		IAI47_08350	0.69	+3.2
1,769,490	-		IAI47_08350	0.69	-2.3
1,769,507	+		IAI47_08350	0.70	-0.7
1,769,587	+		IAI47_08350	0.74	+3.6
1,769,587	+		IAI47_08350	0.74	+0.9
1,769,588	-		IAI47_08350	0.74	+0.5
1,769,712	-		IAI47_08350	0.80	-1.4
1,769,831	+		IAI47_08350	0.86	+4.9
1,770,089	+				-2.6
1,770,104	+				-2.0
1,770,105	-				+2.1
1,770,105	-				+2.2
1,770,129	+				-1.3
1,770,129	+				-0.0
1,770,129	+				+1.3
1,770,130	-				-1.4
1,770,156	+				-1.4
1,770,156	+				+0.2
1,770,156	+				-0.3
1,770,157	-				+0.2
1,770,219	+		IAI47_08355	0.22	-0.5
1,770,222	+		IAI47_08355	0.23	-0.3
1,770,222	+		IAI47_08355	0.23	+1.6
1,770,223	-		IAI47_08355	0.23	-2.2
1,770,298	+		IAI47_08355	0.42	-0.7
1,770,298	+		IAI47_08355	0.42	-0.3
1,770,299	-		IAI47_08355	0.43	-0.1
1,770,299	-		IAI47_08355	0.43	-1.7
1,770,309	-		IAI47_08355	0.45	+5.3
1,770,515	+				-1.4
1,770,515	+				-0.1
1,770,515	+				+4.0
1,770,515	+				-0.1
1,770,516	-				-0.5
1,770,521	+				+3.9
1,770,573	+				-1.7
1,770,573	+				+0.2
1,770,573	+				-2.3
1,770,573	+				+2.4
1,770,573	+				-1.2
1,770,573	+				-1.4
1,770,573	+				-1.1
1,770,573	+				+0.5
1,770,573	+				-1.0
1,770,574	-				+0.9
1,770,574	-				-1.0
1,770,574	-				-0.1
1,770,574	-				+0.9
1,770,574	-				-2.0
1,770,574	-				+3.0
1,770,574	-				+2.9
1,770,574	-				-1.4
1,770,574	-				-1.1
1,770,624	+				+0.2
1,770,635	-				-0.1
1,770,635	-				-0.5
1,770,698	+				-1.1
1,770,711	+				+0.9
1,770,711	+				+1.0
1,770,711	+				-1.4
1,770,712	-				+2.0
1,770,712	-				+0.1
1,770,718	+				+0.9
1,770,718	+				-1.0
1,770,718	+				-1.4
1,770,718	+				-0.1
1,770,718	+				-1.5
1,770,719	-				+1.5
1,770,719	-				+2.5
1,770,795	+		IAI47_08360	0.13	+1.1
1,770,796	-		IAI47_08360	0.13	+4.9
1,770,800	+		IAI47_08360	0.14	-0.7
1,770,800	+		IAI47_08360	0.14	-0.5
1,770,800	+		IAI47_08360	0.14	-1.8
1,770,800	+		IAI47_08360	0.14	+2.8
1,770,800	+		IAI47_08360	0.14	+0.2
1,770,801	-		IAI47_08360	0.14	-1.8
1,770,801	-		IAI47_08360	0.14	+0.2
1,770,801	-		IAI47_08360	0.14	-3.2
1,770,801	-		IAI47_08360	0.14	+0.9
1,770,890	+		IAI47_08360	0.23	-0.4
1,770,890	+		IAI47_08360	0.23	+2.3
1,770,920	-		IAI47_08360	0.26	+0.5
1,770,920	-		IAI47_08360	0.26	+3.5
1,770,942	+		IAI47_08360	0.28	+3.2
1,771,010	+		IAI47_08360	0.35	-2.4
1,771,014	+		IAI47_08360	0.35	-2.4
1,771,014	+		IAI47_08360	0.35	-0.7
1,771,122	-		IAI47_08360	0.46	+0.3
1,771,122	-		IAI47_08360	0.46	-0.5