Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01930 and IAI47_01935 are separated by 261 nucleotides IAI47_01935 and IAI47_01940 are separated by 99 nucleotides IAI47_01940 and IAI47_01945 overlap by 11 nucleotides IAI47_01945 and IAI47_01950 are separated by 41 nucleotides
IAI47_01930: IAI47_01930 - MFS transporter TsgA, at 422,573 to 423,751
_01930
IAI47_01935: IAI47_01935 - peptidylprolyl isomerase A, at 424,013 to 424,585
_01935
IAI47_01940: IAI47_01940 - DUF2559 family protein, at 424,685 to 424,855
_01940
IAI47_01945: IAI47_01945 - putative adenosine monophosphate-protein transferase Fic, at 424,845 to 425,438
_01945
IAI47_01950: IAI47_01950 - aminodeoxychorismate/anthranilate synthase component II, at 425,480 to 426,055
_01950
Position (kb) 424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.702 kb on + strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.703 kb on - strand at 423.716 kb on + strand at 423.717 kb on - strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.733 kb on + strand at 423.734 kb on - strand at 423.734 kb on - strand at 423.734 kb on - strand at 423.739 kb on + strand at 423.740 kb on - strand at 423.798 kb on + strand at 423.819 kb on + strand at 423.837 kb on - strand at 423.846 kb on + strand at 423.847 kb on - strand at 423.855 kb on + strand at 423.855 kb on + strand at 423.855 kb on + strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.856 kb on - strand at 423.869 kb on - strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.923 kb on + strand at 423.924 kb on - strand at 423.924 kb on - strand at 423.928 kb on - strand at 423.929 kb on + strand at 423.929 kb on + strand at 423.929 kb on + strand at 423.933 kb on + strand at 423.933 kb on + strand at 423.953 kb on + strand at 423.953 kb on + strand at 423.964 kb on + strand at 423.964 kb on + strand at 424.018 kb on + strand at 424.018 kb on + strand at 424.019 kb on - strand at 424.019 kb on - strand at 424.019 kb on - strand at 424.024 kb on + strand at 424.025 kb on - strand at 424.029 kb on + strand at 424.029 kb on + strand at 424.029 kb on + strand at 424.030 kb on - strand at 424.129 kb on + strand, within IAI47_01935 at 424.129 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.187 kb on + strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.188 kb on - strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.205 kb on + strand, within IAI47_01935 at 424.206 kb on - strand, within IAI47_01935 at 424.243 kb on + strand, within IAI47_01935 at 424.243 kb on + strand, within IAI47_01935 at 424.244 kb on - strand, within IAI47_01935 at 424.304 kb on - strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.351 kb on + strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.352 kb on - strand, within IAI47_01935 at 424.361 kb on - strand, within IAI47_01935 at 424.411 kb on + strand, within IAI47_01935 at 424.449 kb on - strand, within IAI47_01935 at 424.449 kb on - strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.455 kb on + strand, within IAI47_01935 at 424.456 kb on - strand, within IAI47_01935 at 424.456 kb on - strand, within IAI47_01935 at 424.530 kb on - strand at 424.530 kb on - strand at 424.530 kb on - strand at 424.554 kb on + strand at 424.554 kb on + strand at 424.554 kb on + strand at 424.555 kb on - strand at 424.555 kb on - strand at 424.555 kb on - strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.558 kb on + strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.559 kb on - strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.651 kb on + strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.652 kb on - strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.653 kb on + strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.654 kb on - strand at 424.657 kb on + strand at 424.657 kb on + strand at 424.658 kb on - strand at 424.658 kb on - strand at 424.739 kb on - strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.748 kb on + strand, within IAI47_01940 at 424.749 kb on - strand, within IAI47_01940 at 424.749 kb on - strand, within IAI47_01940 at 424.798 kb on + strand, within IAI47_01940 at 424.844 kb on + strand at 424.844 kb on + strand at 424.845 kb on - strand at 424.845 kb on - strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.853 kb on + strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.854 kb on - strand at 424.856 kb on + strand at 424.878 kb on + strand at 424.878 kb on + strand at 424.879 kb on - strand at 424.879 kb on - strand at 424.962 kb on - strand, within IAI47_01945 at 424.962 kb on - strand, within IAI47_01945 at 425.000 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.055 kb on + strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.056 kb on - strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.087 kb on + strand, within IAI47_01945 at 425.088 kb on - strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.124 kb on + strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.125 kb on - strand, within IAI47_01945 at 425.126 kb on + strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.127 kb on - strand, within IAI47_01945 at 425.180 kb on - strand, within IAI47_01945 at 425.204 kb on + strand, within IAI47_01945 at 425.204 kb on + strand, within IAI47_01945 at 425.205 kb on - strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.223 kb on + strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.224 kb on - strand, within IAI47_01945 at 425.226 kb on + strand, within IAI47_01945 at 425.226 kb on + strand, within IAI47_01945 at 425.227 kb on - strand, within IAI47_01945 at 425.227 kb on - strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.240 kb on + strand, within IAI47_01945 at 425.241 kb on - strand, within IAI47_01945 at 425.444 kb on + strand at 425.445 kb on - strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.501 kb on + strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.502 kb on - strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.512 kb on + strand at 425.513 kb on - strand at 425.525 kb on + strand at 425.526 kb on - strand at 425.526 kb on - strand at 425.531 kb on + strand at 425.531 kb on + strand at 425.531 kb on + strand at 425.532 kb on - strand at 425.532 kb on - strand at 425.744 kb on + strand, within IAI47_01950 at 425.744 kb on + strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.745 kb on - strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.760 kb on + strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.761 kb on - strand, within IAI47_01950 at 425.836 kb on + strand, within IAI47_01950 at 425.846 kb on - strand, within IAI47_01950
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 423,702 + -1.2 423,702 + -0.8 423,702 + +0.7 423,702 + +1.1 423,702 + +1.7 423,702 + -1.9 423,703 - -2.5 423,703 - -2.4 423,703 - -0.8 423,703 - +0.9 423,703 - +3.5 423,703 - +3.4 423,716 + -1.4 423,717 - -3.4 423,733 + +1.3 423,733 + +2.4 423,733 + +0.5 423,733 + -1.8 423,733 + +1.6 423,734 - +1.5 423,734 - -0.4 423,734 - +0.6 423,739 + +2.3 423,740 - -0.3 423,798 + +0.0 423,819 + +3.5 423,837 - +2.8 423,846 + +1.7 423,847 - -2.7 423,855 + +1.0 423,855 + +1.9 423,855 + -1.6 423,856 - -1.4 423,856 - -3.3 423,856 - +3.0 423,856 - -0.4 423,856 - +2.0 423,856 - -1.4 423,869 - -1.3 423,923 + +0.9 423,923 + -0.8 423,923 + +0.6 423,923 + +2.5 423,924 - -3.7 423,924 - +0.0 423,928 - -2.7 423,929 + +4.0 423,929 + -1.2 423,929 + +2.2 423,933 + -1.3 423,933 + +1.9 423,953 + -1.4 423,953 + +2.3 423,964 + +3.4 423,964 + +0.5 424,018 + +4.1 424,018 + +1.7 424,019 - -2.1 424,019 - -3.0 424,019 - -1.5 424,024 + -0.5 424,025 - -1.5 424,029 + +0.8 424,029 + +4.4 424,029 + +3.1 424,030 - +0.7 424,129 + IAI47_01935 0.20 -1.5 424,129 + IAI47_01935 0.20 -0.5 424,187 + IAI47_01935 0.30 -3.6 424,187 + IAI47_01935 0.30 +1.2 424,187 + IAI47_01935 0.30 -1.0 424,187 + IAI47_01935 0.30 +2.7 424,187 + IAI47_01935 0.30 +1.3 424,187 + IAI47_01935 0.30 +2.6 424,187 + IAI47_01935 0.30 +1.5 424,188 - IAI47_01935 0.31 +1.8 424,188 - IAI47_01935 0.31 +0.1 424,188 - IAI47_01935 0.31 +3.2 424,188 - IAI47_01935 0.31 +1.6 424,188 - IAI47_01935 0.31 -1.7 424,188 - IAI47_01935 0.31 +2.2 424,188 - IAI47_01935 0.31 +2.5 424,188 - IAI47_01935 0.31 +2.0 424,188 - IAI47_01935 0.31 -0.4 424,205 + IAI47_01935 0.34 -0.8 424,205 + IAI47_01935 0.34 +1.6 424,205 + IAI47_01935 0.34 +1.2 424,205 + IAI47_01935 0.34 -1.2 424,206 - IAI47_01935 0.34 -1.0 424,243 + IAI47_01935 0.40 +1.5 424,243 + IAI47_01935 0.40 +2.0 424,244 - IAI47_01935 0.40 -1.6 424,304 - IAI47_01935 0.51 +1.2 424,351 + IAI47_01935 0.59 -1.6 424,351 + IAI47_01935 0.59 +3.8 424,351 + IAI47_01935 0.59 +2.5 424,352 - IAI47_01935 0.59 -1.4 424,352 - IAI47_01935 0.59 -0.3 424,352 - IAI47_01935 0.59 -1.8 424,361 - IAI47_01935 0.61 -1.5 424,411 + IAI47_01935 0.69 -1.2 424,449 - IAI47_01935 0.76 -1.8 424,449 - IAI47_01935 0.76 +0.6 424,455 + IAI47_01935 0.77 +0.8 424,455 + IAI47_01935 0.77 -3.1 424,455 + IAI47_01935 0.77 +0.7 424,455 + IAI47_01935 0.77 -0.7 424,455 + IAI47_01935 0.77 -0.7 424,456 - IAI47_01935 0.77 -1.0 424,456 - IAI47_01935 0.77 +1.1 424,530 - -2.5 424,530 - -0.4 424,530 - +1.4 424,554 + -1.1 424,554 + +2.0 424,554 + +3.7 424,555 - -0.7 424,555 - +3.8 424,555 - +1.0 424,558 + +0.7 424,558 + -3.1 424,558 + -1.8 424,558 + +1.9 424,558 + -1.4 424,558 + +3.6 424,558 + +0.6 424,559 - +2.4 424,559 - -2.9 424,559 - -2.0 424,559 - -1.9 424,559 - +1.6 424,651 + -1.4 424,651 + +0.5 424,651 + -1.2 424,651 + -2.5 424,652 - -2.2 424,652 - -0.5 424,652 - -0.7 424,652 - -0.5 424,652 - -3.1 424,652 - +2.4 424,652 - -0.3 424,652 - +1.6 424,652 - -2.8 424,652 - -1.2 424,652 - +0.9 424,653 + +3.7 424,653 + -0.6 424,653 + +1.3 424,653 + -1.1 424,653 + -2.1 424,653 + +3.1 424,653 + -1.9 424,653 + +1.9 424,653 + -2.0 424,653 + +1.6 424,653 + -1.5 424,653 + +3.6 424,654 - -0.7 424,654 - +1.4 424,654 - -1.8 424,654 - +0.6 424,654 - +0.4 424,654 - -1.1 424,654 - +1.5 424,654 - -2.7 424,654 - +2.0 424,654 - +0.3 424,654 - +1.7 424,654 - -1.6 424,657 + -1.6 424,657 + -0.9 424,658 - -1.2 424,658 - -0.0 424,739 - IAI47_01940 0.32 -1.5 424,748 + IAI47_01940 0.37 -0.7 424,748 + IAI47_01940 0.37 -2.3 424,748 + IAI47_01940 0.37 +0.6 424,749 - IAI47_01940 0.37 +0.1 424,749 - IAI47_01940 0.37 +0.3 424,798 + IAI47_01940 0.66 -1.5 424,844 + -1.2 424,844 + -2.4 424,845 - +1.3 424,845 - -0.1 424,853 + +2.5 424,853 + -2.1 424,853 + +1.6 424,853 + -1.6 424,854 - +2.1 424,854 - +2.5 424,854 - +3.7 424,854 - -2.1 424,854 - -1.2 424,854 - -1.8 424,854 - -1.5 424,854 - -1.5 424,854 - -2.9 424,856 + -2.8 424,878 + +3.6 424,878 + -1.4 424,879 - -1.4 424,879 - +1.6 424,962 - IAI47_01945 0.20 -3.0 424,962 - IAI47_01945 0.20 -2.0 425,000 + IAI47_01945 0.26 +3.3 425,055 + IAI47_01945 0.35 +1.6 425,055 + IAI47_01945 0.35 -1.1 425,055 + IAI47_01945 0.35 +2.9 425,055 + IAI47_01945 0.35 +1.4 425,055 + IAI47_01945 0.35 -3.5 425,056 - IAI47_01945 0.36 -1.0 425,056 - IAI47_01945 0.36 +1.9 425,056 - IAI47_01945 0.36 -1.8 425,087 + IAI47_01945 0.41 -1.3 425,087 + IAI47_01945 0.41 +2.3 425,087 + IAI47_01945 0.41 -1.9 425,087 + IAI47_01945 0.41 -0.3 425,088 - IAI47_01945 0.41 +3.0 425,124 + IAI47_01945 0.47 +3.3 425,124 + IAI47_01945 0.47 +2.0 425,124 + IAI47_01945 0.47 -2.3 425,124 + IAI47_01945 0.47 +1.3 425,125 - IAI47_01945 0.47 -2.8 425,125 - IAI47_01945 0.47 -2.1 425,125 - IAI47_01945 0.47 -1.1 425,125 - IAI47_01945 0.47 -0.2 425,125 - IAI47_01945 0.47 +1.9 425,125 - IAI47_01945 0.47 -1.4 425,126 + IAI47_01945 0.47 +2.6 425,127 - IAI47_01945 0.47 +1.0 425,127 - IAI47_01945 0.47 -2.0 425,127 - IAI47_01945 0.47 -1.6 425,180 - IAI47_01945 0.56 +0.3 425,204 + IAI47_01945 0.60 +2.4 425,204 + IAI47_01945 0.60 +2.5 425,205 - IAI47_01945 0.61 -1.0 425,223 + IAI47_01945 0.64 -0.5 425,223 + IAI47_01945 0.64 -0.4 425,223 + IAI47_01945 0.64 +1.8 425,224 - IAI47_01945 0.64 -1.8 425,224 - IAI47_01945 0.64 -2.1 425,224 - IAI47_01945 0.64 -1.5 425,226 + IAI47_01945 0.64 +1.9 425,226 + IAI47_01945 0.64 +2.0 425,227 - IAI47_01945 0.64 -0.2 425,227 - IAI47_01945 0.64 -0.4 425,240 + IAI47_01945 0.66 +0.9 425,240 + IAI47_01945 0.66 -1.0 425,240 + IAI47_01945 0.66 +0.8 425,240 + IAI47_01945 0.66 +3.6 425,240 + IAI47_01945 0.66 +0.8 425,240 + IAI47_01945 0.66 +2.2 425,241 - IAI47_01945 0.67 +1.2 425,444 + -1.8 425,445 - -1.0 425,501 + -1.1 425,501 + -1.7 425,501 + +3.3 425,501 + -0.7 425,501 + -2.8 425,502 - +2.2 425,502 - +3.9 425,502 - +1.3 425,502 - -0.4 425,502 - +0.3 425,502 - +1.4 425,502 - -1.3 425,502 - -2.4 425,512 + +2.1 425,512 + +3.5 425,512 + +0.6 425,512 + +1.4 425,513 - +1.2 425,525 + -0.7 425,526 - +0.9 425,526 - +1.6 425,531 + +2.6 425,531 + -1.2 425,531 + +3.6 425,532 - +2.3 425,532 - +3.2 425,744 + IAI47_01950 0.46 -2.5 425,744 + IAI47_01950 0.46 -1.2 425,745 - IAI47_01950 0.46 -0.1 425,745 - IAI47_01950 0.46 -2.3 425,745 - IAI47_01950 0.46 +5.4 425,745 - IAI47_01950 0.46 +1.8 425,745 - IAI47_01950 0.46 +1.9 425,760 + IAI47_01950 0.49 -1.5 425,760 + IAI47_01950 0.49 -2.3 425,760 + IAI47_01950 0.49 -1.5 425,760 + IAI47_01950 0.49 -1.5 425,761 - IAI47_01950 0.49 -0.9 425,761 - IAI47_01950 0.49 -1.1 425,761 - IAI47_01950 0.49 +4.0 425,761 - IAI47_01950 0.49 -1.8 425,761 - IAI47_01950 0.49 -0.8 425,761 - IAI47_01950 0.49 -2.2 425,836 + IAI47_01950 0.62 +1.4 425,846 - IAI47_01950 0.64 +1.9
Or see this region's nucleotide sequence