Strain Fitness in Pantoea sp. MT58 around IAI47_01115

Experiment: Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01110 and IAI47_01115 overlap by 11 nucleotidesIAI47_01115 and IAI47_01120 are separated by 316 nucleotides IAI47_01110: IAI47_01110 - PLP-dependent aminotransferase family protein, at 238,878 to 240,320 _01110 IAI47_01115: IAI47_01115 - DUF1158 domain-containing protein, at 240,310 to 240,552 _01115 IAI47_01120: IAI47_01120 - manganese efflux pump MntP, at 240,869 to 241,444 _01120 Position (kb) 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 239.340 kb on + strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.363 kb on - strand, within IAI47_01110at 239.389 kb on - strand, within IAI47_01110at 239.435 kb on + strand, within IAI47_01110at 239.436 kb on - strand, within IAI47_01110at 239.448 kb on + strand, within IAI47_01110at 239.554 kb on + strand, within IAI47_01110at 239.554 kb on + strand, within IAI47_01110at 239.555 kb on - strand, within IAI47_01110at 239.555 kb on - strand, within IAI47_01110at 239.692 kb on + strand, within IAI47_01110at 239.745 kb on + strand, within IAI47_01110at 239.754 kb on + strand, within IAI47_01110at 239.754 kb on + strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.755 kb on - strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.879 kb on + strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.880 kb on - strand, within IAI47_01110at 239.956 kb on + strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.957 kb on - strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.996 kb on + strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 239.997 kb on - strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.027 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.069 kb on + strand, within IAI47_01110at 240.070 kb on - strand, within IAI47_01110at 240.116 kb on - strand, within IAI47_01110at 240.125 kb on + strand, within IAI47_01110at 240.126 kb on - strand, within IAI47_01110at 240.195 kb on + strandat 240.346 kb on - strand, within IAI47_01115at 240.359 kb on - strand, within IAI47_01115at 240.359 kb on - strand, within IAI47_01115at 240.370 kb on + strand, within IAI47_01115at 240.371 kb on - strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.399 kb on + strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.400 kb on - strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.401 kb on + strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.402 kb on - strand, within IAI47_01115at 240.421 kb on + strand, within IAI47_01115at 240.421 kb on + strand, within IAI47_01115at 240.422 kb on - strand, within IAI47_01115at 240.451 kb on + strand, within IAI47_01115at 240.546 kb on + strandat 240.546 kb on + strandat 240.546 kb on + strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.547 kb on - strandat 240.566 kb on + strandat 240.566 kb on + strandat 240.566 kb on + strandat 240.567 kb on - strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.570 kb on + strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.571 kb on - strandat 240.721 kb on - strandat 240.721 kb on - strandat 240.804 kb on - strandat 240.863 kb on + strandat 240.864 kb on - strandat 240.878 kb on - strandat 240.888 kb on + strandat 240.888 kb on + strandat 240.904 kb on + strandat 240.904 kb on + strandat 240.905 kb on - strandat 240.905 kb on - strandat 240.905 kb on - strandat 240.967 kb on + strand, within IAI47_01120at 240.968 kb on - strand, within IAI47_01120at 240.982 kb on + strand, within IAI47_01120at 241.003 kb on + strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.004 kb on - strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.058 kb on + strand, within IAI47_01120at 241.059 kb on - strand, within IAI47_01120at 241.059 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.118 kb on - strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.186 kb on + strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.187 kb on - strand, within IAI47_01120at 241.257 kb on + strand, within IAI47_01120at 241.258 kb on - strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.267 kb on + strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.268 kb on - strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.326 kb on + strand, within IAI47_01120at 241.327 kb on - strand, within IAI47_01120at 241.327 kb on - strand, within IAI47_01120at 241.329 kb on + strand, within IAI47_01120at 241.329 kb on + strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.330 kb on - strand, within IAI47_01120at 241.343 kb on - strand, within IAI47_01120at 241.374 kb on + strand, within IAI47_01120at 241.374 kb on + strand, within IAI47_01120at 241.375 kb on - strand, within IAI47_01120at 241.392 kb on + strandat 241.531 kb on + strandat 241.531 kb on + strandat 241.531 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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239,340 + IAI47_01110 0.32 +0.6
239,363 - IAI47_01110 0.34 +0.7
239,363 - IAI47_01110 0.34 +0.4
239,363 - IAI47_01110 0.34 -0.4
239,389 - IAI47_01110 0.35 +1.7
239,435 + IAI47_01110 0.39 +4.8
239,436 - IAI47_01110 0.39 +0.1
239,448 + IAI47_01110 0.40 +3.8
239,554 + IAI47_01110 0.47 -3.2
239,554 + IAI47_01110 0.47 +0.1
239,555 - IAI47_01110 0.47 -3.4
239,555 - IAI47_01110 0.47 -1.9
239,692 + IAI47_01110 0.56 +2.9
239,745 + IAI47_01110 0.60 +2.1
239,754 + IAI47_01110 0.61 +0.8
239,754 + IAI47_01110 0.61 +2.9
239,755 - IAI47_01110 0.61 -1.9
239,755 - IAI47_01110 0.61 -0.4
239,755 - IAI47_01110 0.61 +4.0
239,755 - IAI47_01110 0.61 -1.0
239,755 - IAI47_01110 0.61 -1.7
239,755 - IAI47_01110 0.61 +1.2
239,879 + IAI47_01110 0.69 +1.7
239,879 + IAI47_01110 0.69 -0.4
239,879 + IAI47_01110 0.69 -2.7
239,880 - IAI47_01110 0.69 +1.1
239,880 - IAI47_01110 0.69 +1.1
239,880 - IAI47_01110 0.69 +1.6
239,880 - IAI47_01110 0.69 -3.0
239,956 + IAI47_01110 0.75 +0.9
239,957 - IAI47_01110 0.75 +2.6
239,957 - IAI47_01110 0.75 +2.0
239,957 - IAI47_01110 0.75 +4.6
239,996 + IAI47_01110 0.77 -3.5
239,996 + IAI47_01110 0.77 -1.4
239,996 + IAI47_01110 0.77 +1.0
239,997 - IAI47_01110 0.78 +0.8
239,997 - IAI47_01110 0.78 -1.7
239,997 - IAI47_01110 0.78 -3.6
239,997 - IAI47_01110 0.78 +4.2
239,997 - IAI47_01110 0.78 -2.8
240,027 + IAI47_01110 0.80 +3.0
240,027 + IAI47_01110 0.80 +1.0
240,027 + IAI47_01110 0.80 +1.9
240,069 + IAI47_01110 0.83 +1.4
240,069 + IAI47_01110 0.83 +2.7
240,069 + IAI47_01110 0.83 +3.7
240,069 + IAI47_01110 0.83 +1.0
240,069 + IAI47_01110 0.83 -2.3
240,070 - IAI47_01110 0.83 +0.8
240,116 - IAI47_01110 0.86 -0.2
240,125 + IAI47_01110 0.86 +1.6
240,126 - IAI47_01110 0.86 -1.6
240,195 + +1.7
240,346 - IAI47_01115 0.15 -2.5
240,359 - IAI47_01115 0.20 +3.3
240,359 - IAI47_01115 0.20 -0.4
240,370 + IAI47_01115 0.25 -4.1
240,371 - IAI47_01115 0.25 -0.9
240,399 + IAI47_01115 0.37 -1.5
240,399 + IAI47_01115 0.37 -1.6
240,399 + IAI47_01115 0.37 -1.9
240,399 + IAI47_01115 0.37 +0.7
240,400 - IAI47_01115 0.37 +1.1
240,400 - IAI47_01115 0.37 +4.0
240,400 - IAI47_01115 0.37 +2.2
240,400 - IAI47_01115 0.37 +1.5
240,401 + IAI47_01115 0.37 +2.5
240,401 + IAI47_01115 0.37 +0.7
240,401 + IAI47_01115 0.37 -0.2
240,401 + IAI47_01115 0.37 +2.4
240,401 + IAI47_01115 0.37 +2.8
240,401 + IAI47_01115 0.37 +2.5
240,401 + IAI47_01115 0.37 -0.4
240,402 - IAI47_01115 0.38 +0.5
240,402 - IAI47_01115 0.38 +1.7
240,402 - IAI47_01115 0.38 +4.6
240,421 + IAI47_01115 0.46 +4.5
240,421 + IAI47_01115 0.46 +0.8
240,422 - IAI47_01115 0.46 -2.9
240,451 + IAI47_01115 0.58 +1.2
240,546 + -1.8
240,546 + -2.4
240,546 + +2.2
240,547 - -1.2
240,547 - -0.6
240,547 - -2.0
240,547 - -1.9
240,547 - -1.9
240,566 + -2.9
240,566 + -2.0
240,566 + -1.5
240,567 - +0.5
240,570 + -0.4
240,570 + +2.9
240,570 + +0.7
240,570 + +1.8
240,571 - +2.1
240,571 - +1.8
240,571 - +2.2
240,571 - +0.6
240,571 - -0.2
240,571 - +3.9
240,721 - +1.9
240,721 - -2.4
240,804 - -1.6
240,863 + +0.9
240,864 - -2.1
240,878 - -2.4
240,888 + -1.7
240,888 + -1.0
240,904 + -1.0
240,904 + -1.8
240,905 - +0.6
240,905 - -1.2
240,905 - -2.0
240,967 + IAI47_01120 0.17 -2.9
240,968 - IAI47_01120 0.17 -1.9
240,982 + IAI47_01120 0.20 +0.9
241,003 + IAI47_01120 0.23 -1.3
241,004 - IAI47_01120 0.23 -1.9
241,004 - IAI47_01120 0.23 -1.6
241,004 - IAI47_01120 0.23 -2.5
241,004 - IAI47_01120 0.23 -0.7
241,058 + IAI47_01120 0.33 -0.6
241,058 + IAI47_01120 0.33 -2.5
241,058 + IAI47_01120 0.33 +0.0
241,058 + IAI47_01120 0.33 -1.4
241,058 + IAI47_01120 0.33 -0.1
241,059 - IAI47_01120 0.33 -0.7
241,059 - IAI47_01120 0.33 -1.6
241,118 - IAI47_01120 0.43 -1.7
241,118 - IAI47_01120 0.43 -1.2
241,118 - IAI47_01120 0.43 -3.6
241,186 + IAI47_01120 0.55 -0.5
241,186 + IAI47_01120 0.55 +0.9
241,186 + IAI47_01120 0.55 -2.2
241,186 + IAI47_01120 0.55 -1.8
241,187 - IAI47_01120 0.55 -2.8
241,187 - IAI47_01120 0.55 -1.8
241,187 - IAI47_01120 0.55 -2.1
241,257 + IAI47_01120 0.67 -0.8
241,258 - IAI47_01120 0.68 -1.6
241,267 + IAI47_01120 0.69 -0.8
241,267 + IAI47_01120 0.69 -0.9
241,267 + IAI47_01120 0.69 +0.1
241,267 + IAI47_01120 0.69 -1.9
241,267 + IAI47_01120 0.69 +0.0
241,268 - IAI47_01120 0.69 -1.6
241,268 - IAI47_01120 0.69 +1.3
241,268 - IAI47_01120 0.69 -1.9
241,268 - IAI47_01120 0.69 -1.4
241,326 + IAI47_01120 0.79 -0.9
241,326 + IAI47_01120 0.79 -1.2
241,326 + IAI47_01120 0.79 -1.1
241,326 + IAI47_01120 0.79 -2.9
241,326 + IAI47_01120 0.79 -2.9
241,326 + IAI47_01120 0.79 -1.1
241,327 - IAI47_01120 0.80 -1.6
241,327 - IAI47_01120 0.80 -3.0
241,329 + IAI47_01120 0.80 -1.4
241,329 + IAI47_01120 0.80 -2.3
241,330 - IAI47_01120 0.80 -0.6
241,330 - IAI47_01120 0.80 -1.9
241,330 - IAI47_01120 0.80 -0.0
241,343 - IAI47_01120 0.82 -1.9
241,374 + IAI47_01120 0.88 -1.2
241,374 + IAI47_01120 0.88 -0.6
241,375 - IAI47_01120 0.88 -0.7
241,392 + +0.3
241,531 + -2.2
241,531 + +1.6
241,531 + +1.8

Or see this region's nucleotide sequence