Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3326 and Dsui_3327 are separated by 123 nucleotides Dsui_3327 and Dsui_3328 are separated by 102 nucleotides Dsui_3328 and Dsui_3329 are separated by 242 nucleotides
Dsui_3326: Dsui_3326 - protein-export membrane protein, SecD/SecF family, at 3,566,461 to 3,567,408
_3326
Dsui_3327: Dsui_3327 - cytochrome b, at 3,567,532 to 3,568,248
_3327
Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821
_3328
Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381
_3329
Position (kb)
3567
3568
3569 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3567.445 kb on + strand at 3567.596 kb on + strand at 3567.659 kb on + strand, within Dsui_3327 at 3567.741 kb on + strand, within Dsui_3327 at 3567.860 kb on - strand, within Dsui_3327 at 3567.962 kb on - strand, within Dsui_3327 at 3568.049 kb on + strand, within Dsui_3327 at 3568.117 kb on - strand at 3568.252 kb on - strand at 3568.305 kb on + strand at 3568.349 kb on + strand at 3568.369 kb on - strand at 3568.424 kb on + strand, within Dsui_3328 at 3568.526 kb on + strand, within Dsui_3328 at 3568.568 kb on - strand, within Dsui_3328 at 3568.568 kb on - strand, within Dsui_3328 at 3568.590 kb on + strand, within Dsui_3328 at 3568.653 kb on - strand, within Dsui_3328 at 3568.663 kb on - strand, within Dsui_3328 at 3568.686 kb on + strand, within Dsui_3328 at 3568.748 kb on - strand, within Dsui_3328 at 3568.780 kb on - strand at 3568.804 kb on - strand at 3568.804 kb on - strand at 3568.810 kb on - strand at 3568.861 kb on + strand at 3568.905 kb on + strand at 3569.079 kb on - strand at 3569.095 kb on + strand at 3569.174 kb on + strand, within Dsui_3329 at 3569.230 kb on + strand, within Dsui_3329
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 3,567,445 + -0.2 3,567,596 + +0.2 3,567,659 + Dsui_3327 0.18 +0.3 3,567,741 + Dsui_3327 0.29 +0.3 3,567,860 - Dsui_3327 0.46 +0.5 3,567,962 - Dsui_3327 0.60 +0.5 3,568,049 + Dsui_3327 0.72 -0.3 3,568,117 - +0.5 3,568,252 - -2.1 3,568,305 + -3.2 3,568,349 + +0.5 3,568,369 - -0.1 3,568,424 + Dsui_3328 0.15 +0.5 3,568,526 + Dsui_3328 0.37 -1.8 3,568,568 - Dsui_3328 0.46 -0.5 3,568,568 - Dsui_3328 0.46 -0.1 3,568,590 + Dsui_3328 0.51 -0.5 3,568,653 - Dsui_3328 0.64 -0.3 3,568,663 - Dsui_3328 0.66 -0.1 3,568,686 + Dsui_3328 0.71 +0.5 3,568,748 - Dsui_3328 0.84 -0.1 3,568,780 - +0.0 3,568,804 - -0.1 3,568,804 - +0.0 3,568,810 - -0.1 3,568,861 + -2.8 3,568,905 + -1.8 3,569,079 - +0.0 3,569,095 + +0.5 3,569,174 + Dsui_3329 0.35 -0.5 3,569,230 + Dsui_3329 0.52 -2.5
Or see this region's nucleotide sequence