Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2871 and Dsui_2872 are separated by 176 nucleotides Dsui_2872 and Dsui_2873 are separated by 10 nucleotides Dsui_2873 and Dsui_2874 are separated by 222 nucleotides
Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799
_2871
Dsui_2872: Dsui_2872 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 3,066,976 to 3,067,464
_2872
Dsui_2873: Dsui_2873 - Peroxiredoxin, at 3,067,475 to 3,067,939
_2873
Dsui_2874: Dsui_2874 - putative periplasmic/secreted protein, at 3,068,162 to 3,068,845
_2874
Position (kb)
3067
3068 Strain fitness (log2 ratio)
-2
-1
0
1 at 3066.624 kb on - strand, within Dsui_2871 at 3066.626 kb on + strand at 3066.665 kb on + strand, within Dsui_2871 at 3066.776 kb on + strand at 3066.833 kb on - strand at 3066.833 kb on - strand at 3066.865 kb on + strand at 3066.890 kb on + strand at 3067.064 kb on - strand, within Dsui_2872 at 3067.066 kb on - strand, within Dsui_2872 at 3067.092 kb on - strand, within Dsui_2872 at 3067.097 kb on - strand, within Dsui_2872 at 3067.243 kb on - strand, within Dsui_2872 at 3067.310 kb on + strand, within Dsui_2872 at 3067.318 kb on - strand, within Dsui_2872 at 3067.433 kb on + strand at 3067.583 kb on - strand, within Dsui_2873 at 3067.937 kb on - strand at 3068.119 kb on + strand at 3068.194 kb on - strand at 3068.244 kb on + strand, within Dsui_2874 at 3068.382 kb on + strand, within Dsui_2874 at 3068.423 kb on + strand, within Dsui_2874 at 3068.423 kb on + strand, within Dsui_2874 at 3068.438 kb on + strand, within Dsui_2874 at 3068.547 kb on + strand, within Dsui_2874 at 3068.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 3,066,624 - Dsui_2871 0.80 -1.0 3,066,626 + +0.6 3,066,665 + Dsui_2871 0.85 +0.6 3,066,776 + +0.6 3,066,833 - +0.4 3,066,833 - -0.3 3,066,865 + -1.4 3,066,890 + +0.6 3,067,064 - Dsui_2872 0.18 -0.1 3,067,066 - Dsui_2872 0.18 +0.1 3,067,092 - Dsui_2872 0.24 -0.2 3,067,097 - Dsui_2872 0.25 -0.1 3,067,243 - Dsui_2872 0.55 -0.0 3,067,310 + Dsui_2872 0.68 +0.1 3,067,318 - Dsui_2872 0.70 -0.4 3,067,433 + +0.6 3,067,583 - Dsui_2873 0.23 +0.3 3,067,937 - -0.7 3,068,119 + -0.4 3,068,194 - -2.0 3,068,244 + Dsui_2874 0.12 -2.1 3,068,382 + Dsui_2874 0.32 -0.1 3,068,423 + Dsui_2874 0.38 -0.1 3,068,423 + Dsui_2874 0.38 -0.5 3,068,438 + Dsui_2874 0.40 +0.0 3,068,547 + Dsui_2874 0.56 +0.3 3,068,933 - -0.4
Or see this region's nucleotide sequence