Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2788 and Dsui_2789 are separated by 157 nucleotides Dsui_2789 and Dsui_2790 are separated by 66 nucleotides Dsui_2790 and Dsui_2791 are separated by 23 nucleotides Dsui_2791 and Dsui_2792 are separated by 89 nucleotides Dsui_2792 and Dsui_2793 are separated by 232 nucleotides Dsui_2793 and Dsui_2794 are separated by 23 nucleotides Dsui_2794 and Dsui_2795 are separated by 55 nucleotides
Dsui_2788: Dsui_2788 - tRNA-Val, at 2,961,459 to 2,961,533
_2788
Dsui_2789: Dsui_2789 - glutamyl-tRNA synthetase, at 2,961,691 to 2,963,082
_2789
Dsui_2790: Dsui_2790 - tRNA-Ala, at 2,963,149 to 2,963,224
_2790
Dsui_2791: Dsui_2791 - tRNA-Glu, at 2,963,248 to 2,963,323
_2791
Dsui_2792: Dsui_2792 - tRNA-Asp, at 2,963,413 to 2,963,489
_2792
Dsui_2793: Dsui_2793 - tRNA-Ala, at 2,963,722 to 2,963,797
_2793
Dsui_2794: Dsui_2794 - tRNA-Glu, at 2,963,821 to 2,963,896
_2794
Dsui_2795: Dsui_2795 - tRNA-Asp, at 2,963,952 to 2,964,028
_2795
Position (kb)
2961
2962
2963
2964 Strain fitness (log2 ratio)
-2
-1
0
1 at 2960.785 kb on - strand at 2960.785 kb on - strand at 2960.895 kb on - strand at 2960.895 kb on - strand at 2960.895 kb on - strand at 2960.919 kb on - strand at 2960.961 kb on - strand at 2960.961 kb on - strand at 2961.025 kb on - strand at 2961.140 kb on - strand at 2961.140 kb on - strand at 2961.237 kb on - strand at 2961.561 kb on - strand at 2963.099 kb on + strand at 2963.107 kb on - strand at 2963.323 kb on + strand at 2963.360 kb on + strand at 2963.385 kb on + strand at 2963.550 kb on + strand at 2963.550 kb on + strand at 2963.582 kb on + strand at 2963.583 kb on + strand at 2963.631 kb on + strand at 2963.636 kb on + strand at 2963.937 kb on + strand at 2963.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 2,960,785 - +0.6 2,960,785 - +0.6 2,960,895 - -1.4 2,960,895 - -1.0 2,960,895 - -0.4 2,960,919 - +0.6 2,960,961 - +0.6 2,960,961 - +1.2 2,961,025 - -1.7 2,961,140 - -0.4 2,961,140 - +0.6 2,961,237 - +0.6 2,961,561 - -0.2 2,963,099 + +0.1 2,963,107 - +0.6 2,963,323 + -0.0 2,963,360 + +0.2 2,963,385 + +0.2 2,963,550 + -2.6 2,963,550 + -1.0 2,963,582 + -2.6 2,963,583 + -1.4 2,963,631 + -0.4 2,963,636 + +0.6 2,963,937 + -0.0 2,963,937 + +0.2
Or see this region's nucleotide sequence