Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1841 and Dsui_1842 are separated by 10 nucleotides Dsui_1842 and Dsui_1843 are separated by 579 nucleotides Dsui_1843 and Dsui_1844 are separated by 61 nucleotides Dsui_1844 and Dsui_1845 are separated by 11 nucleotides
Dsui_1841: Dsui_1841 - hypothetical protein, at 1,937,979 to 1,938,401
_1841
Dsui_1842: Dsui_1842 - hypothetical protein, at 1,938,412 to 1,938,594
_1842
Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590
_1843
Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305
_1844
Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360
_1845
Position (kb) 1939
1940 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1938.277 kb on - strand, within Dsui_1841 at 1938.324 kb on - strand at 1938.334 kb on - strand, within Dsui_1841 at 1938.352 kb on + strand, within Dsui_1841 at 1938.560 kb on - strand, within Dsui_1842 at 1938.577 kb on + strand at 1938.580 kb on - strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.609 kb on - strand at 1938.762 kb on + strand at 1938.825 kb on + strand at 1938.827 kb on - strand at 1938.893 kb on + strand at 1938.917 kb on + strand at 1938.917 kb on + strand at 1938.934 kb on + strand at 1938.934 kb on + strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.995 kb on + strand at 1938.995 kb on + strand at 1939.003 kb on - strand at 1939.217 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.229 kb on + strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.311 kb on - strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.525 kb on + strand, within Dsui_1843 at 1939.625 kb on - strand at 1939.639 kb on + strand at 1939.731 kb on - strand, within Dsui_1844 at 1939.770 kb on + strand, within Dsui_1844 at 1939.778 kb on - strand at 1939.817 kb on + strand, within Dsui_1844 at 1939.997 kb on + strand, within Dsui_1844 at 1940.005 kb on - strand, within Dsui_1844 at 1940.034 kb on + strand, within Dsui_1844 at 1940.068 kb on + strand at 1940.068 kb on + strand, within Dsui_1844 at 1940.076 kb on - strand, within Dsui_1844 at 1940.315 kb on + strand at 1940.348 kb on + strand at 1940.353 kb on + strand at 1940.378 kb on - strand at 1940.394 kb on + strand at 1940.485 kb on - strand, within Dsui_1845
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 1,938,277 - Dsui_1841 0.70 +0.5 1,938,324 - -1.5 1,938,334 - Dsui_1841 0.84 -1.0 1,938,352 + Dsui_1841 0.88 +0.5 1,938,560 - Dsui_1842 0.81 -1.0 1,938,577 + -0.5 1,938,580 - -0.5 1,938,601 + +0.5 1,938,601 + +0.5 1,938,601 + -1.5 1,938,609 - -0.5 1,938,762 + -0.5 1,938,825 + -1.3 1,938,827 - -1.0 1,938,893 + -0.1 1,938,917 + -0.3 1,938,917 + +0.2 1,938,934 + +0.2 1,938,934 + -0.4 1,938,942 - -0.0 1,938,942 - -2.7 1,938,942 - -1.4 1,938,995 + +0.6 1,938,995 + +0.3 1,939,003 - +0.1 1,939,217 + Dsui_1843 0.10 -0.7 1,939,222 + Dsui_1843 0.12 +0.6 1,939,222 + Dsui_1843 0.12 +0.7 1,939,222 + Dsui_1843 0.12 -2.0 1,939,222 + Dsui_1843 0.12 +1.0 1,939,229 + Dsui_1843 0.13 -0.2 1,939,230 - Dsui_1843 0.13 +0.6 1,939,230 - Dsui_1843 0.13 +0.6 1,939,230 - Dsui_1843 0.13 +0.6 1,939,311 - Dsui_1843 0.33 -0.4 1,939,330 + Dsui_1843 0.37 +2.6 1,939,330 + Dsui_1843 0.37 -1.8 1,939,525 + Dsui_1843 0.84 +0.6 1,939,625 - -1.4 1,939,639 + +0.6 1,939,731 - Dsui_1844 0.12 +0.6 1,939,770 + Dsui_1844 0.18 +0.6 1,939,778 - +0.6 1,939,817 + Dsui_1844 0.25 +0.6 1,939,997 + Dsui_1844 0.53 -1.0 1,940,005 - Dsui_1844 0.54 +0.6 1,940,034 + Dsui_1844 0.58 +0.6 1,940,068 + +0.6 1,940,068 + Dsui_1844 0.64 -0.4 1,940,076 - Dsui_1844 0.65 -1.0 1,940,315 + -2.2 1,940,348 + -1.0 1,940,353 + +0.6 1,940,378 - +0.6 1,940,394 + -1.0 1,940,485 - Dsui_1845 0.16 -0.4
Or see this region's nucleotide sequence