Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1412 and Dsui_1413 overlap by 4 nucleotides Dsui_1413 and Dsui_1414 are separated by 153 nucleotides Dsui_1414 and Dsui_1415 are separated by 14 nucleotides Dsui_1415 and Dsui_1416 overlap by 1 nucleotides
Dsui_1412: Dsui_1412 - chromate transport protein ChrA, at 1,469,388 to 1,469,987
_1412
Dsui_1413: Dsui_1413 - chromate transport protein ChrA, at 1,469,984 to 1,470,505
_1413
Dsui_1414: Dsui_1414 - histidinol-phosphate aminotransferase, at 1,470,659 to 1,471,846
_1414
Dsui_1415: Dsui_1415 - imidazoleglycerol-phosphate dehydratase, at 1,471,861 to 1,472,448
_1415
Dsui_1416: Dsui_1416 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,472,448 to 1,473,086
_1416
Position (kb)
1470
1471
1472 Strain fitness (log2 ratio)
-1
0
1
2 at 1469.669 kb on + strand, within Dsui_1412 at 1469.834 kb on - strand, within Dsui_1412 at 1469.874 kb on - strand, within Dsui_1412 at 1469.902 kb on + strand, within Dsui_1412 at 1470.047 kb on + strand, within Dsui_1413 at 1470.075 kb on + strand, within Dsui_1413 at 1470.167 kb on + strand, within Dsui_1413 at 1470.183 kb on + strand, within Dsui_1413 at 1470.499 kb on + strand at 1470.507 kb on - strand at 1470.608 kb on - strand at 1470.631 kb on + strand at 1471.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 1,469,669 + Dsui_1412 0.47 +0.3 1,469,834 - Dsui_1412 0.74 -0.5 1,469,874 - Dsui_1412 0.81 +0.5 1,469,902 + Dsui_1412 0.86 +1.9 1,470,047 + Dsui_1413 0.12 -1.0 1,470,075 + Dsui_1413 0.17 -0.4 1,470,167 + Dsui_1413 0.35 -0.5 1,470,183 + Dsui_1413 0.38 -1.4 1,470,499 + -0.7 1,470,507 - +0.5 1,470,608 - -1.1 1,470,631 + +0.5 1,471,808 - -0.4
Or see this region's nucleotide sequence