Strain Fitness in Dechlorosoma suillum PS around Dsui_1297

Experiment: ALP with nitrite 0.45 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1295 and Dsui_1296 are separated by 21 nucleotidesDsui_1296 and Dsui_1297 are separated by 85 nucleotidesDsui_1297 and Dsui_1298 are separated by 5 nucleotidesDsui_1298 and Dsui_1299 are separated by 69 nucleotides Dsui_1295: Dsui_1295 - lipid A core-O-antigen ligase-like enyme, at 1,357,876 to 1,359,690 _1295 Dsui_1296: Dsui_1296 - putative amidophosphoribosyltransferase, at 1,359,712 to 1,360,437 _1296 Dsui_1297: Dsui_1297 - biotin synthetase, at 1,360,523 to 1,361,530 _1297 Dsui_1298: Dsui_1298 - methylase involved in ubiquinone/menaquinone biosynthesis, at 1,361,536 to 1,362,438 _1298 Dsui_1299: Dsui_1299 - putative membrane protein, at 1,362,508 to 1,363,209 _1299 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -2 -1 0 1at 1359.531 kb on + strandat 1359.552 kb on + strandat 1359.566 kb on + strandat 1359.566 kb on + strandat 1359.574 kb on - strandat 1359.604 kb on - strandat 1359.622 kb on + strandat 1359.624 kb on - strandat 1359.648 kb on + strandat 1359.658 kb on + strandat 1359.666 kb on - strandat 1359.756 kb on - strandat 1359.842 kb on - strand, within Dsui_1296at 1359.906 kb on + strand, within Dsui_1296at 1359.914 kb on - strand, within Dsui_1296at 1359.970 kb on - strandat 1359.984 kb on - strand, within Dsui_1296at 1360.080 kb on - strand, within Dsui_1296at 1360.124 kb on - strand, within Dsui_1296at 1360.129 kb on - strand, within Dsui_1296at 1360.226 kb on - strand, within Dsui_1296at 1360.238 kb on - strand, within Dsui_1296at 1360.402 kb on + strandat 1360.410 kb on + strandat 1360.410 kb on - strandat 1360.918 kb on + strand, within Dsui_1297at 1361.279 kb on + strand, within Dsui_1297at 1361.290 kb on + strand, within Dsui_1297at 1361.355 kb on + strand, within Dsui_1297at 1362.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM
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1,359,531 + -0.6
1,359,552 + -0.6
1,359,566 + +0.4
1,359,566 + +0.4
1,359,574 - -2.1
1,359,604 - -2.1
1,359,622 + +0.4
1,359,624 - -2.7
1,359,648 + -1.1
1,359,658 + +0.4
1,359,666 - -0.6
1,359,756 - +0.4
1,359,842 - Dsui_1296 0.18 +0.4
1,359,906 + Dsui_1296 0.27 -1.6
1,359,914 - Dsui_1296 0.28 +0.4
1,359,970 - -0.6
1,359,984 - Dsui_1296 0.37 -1.6
1,360,080 - Dsui_1296 0.51 +0.4
1,360,124 - Dsui_1296 0.57 -1.6
1,360,129 - Dsui_1296 0.57 -0.6
1,360,226 - Dsui_1296 0.71 -2.6
1,360,238 - Dsui_1296 0.72 +0.4
1,360,402 + +0.4
1,360,410 + +0.4
1,360,410 - +0.4
1,360,918 + Dsui_1297 0.39 -0.0
1,361,279 + Dsui_1297 0.75 -0.1
1,361,290 + Dsui_1297 0.76 -0.2
1,361,355 + Dsui_1297 0.83 +0.0
1,362,487 - -0.9

Or see this region's nucleotide sequence