Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0960 and Dsui_0961 are separated by 96 nucleotides Dsui_0961 and Dsui_0962 are separated by 140 nucleotides
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Dsui_0961: Dsui_0961 - RNA polymerase sigma factor, SigZ family, at 986,852 to 987,415
_0961
Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569
_0962
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1 at 985.856 kb on + strand, within Dsui_0960 at 985.869 kb on - strand, within Dsui_0960 at 985.932 kb on + strand, within Dsui_0960 at 986.099 kb on + strand at 986.165 kb on + strand, within Dsui_0960 at 986.190 kb on + strand, within Dsui_0960 at 986.237 kb on + strand, within Dsui_0960 at 986.271 kb on - strand, within Dsui_0960 at 986.294 kb on - strand, within Dsui_0960 at 986.438 kb on + strand, within Dsui_0960 at 986.593 kb on + strand, within Dsui_0960 at 986.611 kb on + strand, within Dsui_0960 at 986.852 kb on - strand at 986.927 kb on + strand at 986.975 kb on + strand, within Dsui_0961 at 986.996 kb on - strand, within Dsui_0961 at 987.008 kb on - strand, within Dsui_0961 at 987.216 kb on - strand, within Dsui_0961 at 987.228 kb on + strand at 987.316 kb on + strand, within Dsui_0961 at 987.324 kb on - strand, within Dsui_0961 at 987.436 kb on + strand at 987.480 kb on - strand at 987.524 kb on - strand at 987.524 kb on - strand at 987.599 kb on + strand at 987.721 kb on + strand, within Dsui_0962 at 987.773 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.919 kb on + strand, within Dsui_0962 at 987.924 kb on + strand, within Dsui_0962 at 987.946 kb on - strand, within Dsui_0962 at 987.988 kb on + strand, within Dsui_0962 at 988.074 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.264 kb on - strand, within Dsui_0962 at 988.284 kb on + strand, within Dsui_0962 at 988.350 kb on - strand, within Dsui_0962 at 988.411 kb on - strand, within Dsui_0962
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 985,856 + Dsui_0960 0.15 -0.5 985,869 - Dsui_0960 0.16 +0.5 985,932 + Dsui_0960 0.22 -1.0 986,099 + +0.5 986,165 + Dsui_0960 0.44 +0.5 986,190 + Dsui_0960 0.46 -1.0 986,237 + Dsui_0960 0.51 +0.5 986,271 - Dsui_0960 0.54 -1.0 986,294 - Dsui_0960 0.56 -2.5 986,438 + Dsui_0960 0.70 -1.0 986,593 + Dsui_0960 0.85 -0.5 986,611 + Dsui_0960 0.86 +0.5 986,852 - +0.5 986,927 + +0.5 986,975 + Dsui_0961 0.22 +0.5 986,996 - Dsui_0961 0.26 +0.5 987,008 - Dsui_0961 0.28 -0.3 987,216 - Dsui_0961 0.65 +0.5 987,228 + +0.5 987,316 + Dsui_0961 0.82 -0.5 987,324 - Dsui_0961 0.84 -2.0 987,436 + -1.8 987,480 - +0.5 987,524 - +0.5 987,524 - -0.5 987,599 + -0.2 987,721 + Dsui_0962 0.16 +0.1 987,773 + Dsui_0962 0.21 -0.6 987,845 + Dsui_0962 0.29 -0.2 987,845 + Dsui_0962 0.29 -0.2 987,919 + Dsui_0962 0.36 -0.5 987,924 + Dsui_0962 0.36 -0.1 987,946 - Dsui_0962 0.38 -2.5 987,988 + Dsui_0962 0.43 -0.5 988,074 + Dsui_0962 0.51 -0.5 988,256 + Dsui_0962 0.69 -0.3 988,256 + Dsui_0962 0.69 +0.1 988,256 + Dsui_0962 0.69 +0.1 988,256 + Dsui_0962 0.69 -1.7 988,264 - Dsui_0962 0.70 +0.5 988,284 + Dsui_0962 0.72 -0.0 988,350 - Dsui_0962 0.78 -1.8 988,411 - Dsui_0962 0.84 -0.5
Or see this region's nucleotide sequence