Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0954 and Dsui_0955 are separated by 381 nucleotides Dsui_0955 and Dsui_0956 are separated by 108 nucleotides
Dsui_0954: Dsui_0954 - Dinitrogenase reductase ADP-ribosyltransferase (DRAT), at 979,514 to 980,365
_0954
Dsui_0955: Dsui_0955 - nitrogenase iron protein, at 980,747 to 981,622
_0955
Dsui_0956: Dsui_0956 - nitrogenase molybdenum-iron protein alpha chain, at 981,731 to 983,173
_0956
Position (kb)
980
981
982 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 979.837 kb on + strand at 979.846 kb on + strand, within Dsui_0954 at 979.956 kb on + strand at 980.077 kb on - strand, within Dsui_0954 at 980.163 kb on + strand, within Dsui_0954 at 980.242 kb on - strand, within Dsui_0954 at 980.522 kb on + strand at 980.675 kb on - strand at 980.686 kb on - strand at 980.688 kb on + strand at 980.694 kb on + strand at 980.838 kb on - strand at 980.917 kb on - strand, within Dsui_0955 at 981.100 kb on - strand at 981.249 kb on - strand, within Dsui_0955 at 981.249 kb on - strand, within Dsui_0955 at 981.303 kb on - strand at 981.368 kb on - strand, within Dsui_0955 at 981.455 kb on - strand, within Dsui_0955 at 981.466 kb on + strand, within Dsui_0955 at 981.496 kb on - strand, within Dsui_0955 at 981.501 kb on - strand at 981.604 kb on + strand at 981.735 kb on + strand at 981.774 kb on + strand at 981.782 kb on - strand at 981.836 kb on - strand at 981.836 kb on - strand at 981.879 kb on - strand, within Dsui_0956 at 981.965 kb on + strand, within Dsui_0956 at 982.216 kb on + strand, within Dsui_0956 at 982.351 kb on + strand, within Dsui_0956 at 982.599 kb on + strand, within Dsui_0956 at 982.613 kb on + strand, within Dsui_0956
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 979,837 + -0.5 979,846 + Dsui_0954 0.39 -0.8 979,956 + +0.5 980,077 - Dsui_0954 0.66 -0.5 980,163 + Dsui_0954 0.76 -1.5 980,242 - Dsui_0954 0.85 -0.5 980,522 + -0.5 980,675 - -2.0 980,686 - -1.5 980,688 + +0.5 980,694 + -3.0 980,838 - +0.5 980,917 - Dsui_0955 0.19 -0.5 981,100 - +0.5 981,249 - Dsui_0955 0.57 -1.0 981,249 - Dsui_0955 0.57 -1.0 981,303 - +0.5 981,368 - Dsui_0955 0.71 -1.5 981,455 - Dsui_0955 0.81 -2.0 981,466 + Dsui_0955 0.82 -0.5 981,496 - Dsui_0955 0.86 +0.5 981,501 - +0.5 981,604 + +0.5 981,735 + +0.5 981,774 + -0.5 981,782 - +0.5 981,836 - +0.5 981,836 - +0.5 981,879 - Dsui_0956 0.10 -2.3 981,965 + Dsui_0956 0.16 -1.0 982,216 + Dsui_0956 0.34 +0.5 982,351 + Dsui_0956 0.43 +0.5 982,599 + Dsui_0956 0.60 +0.5 982,613 + Dsui_0956 0.61 +0.5
Or see this region's nucleotide sequence