Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0926 and Dsui_0927 are separated by 3 nucleotides Dsui_0927 and Dsui_0928 are separated by 181 nucleotides
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836
_0927
Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433
_0928
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.659 kb on - strand at 954.814 kb on + strand, within Dsui_0926 at 954.834 kb on + strand, within Dsui_0926 at 954.992 kb on - strand, within Dsui_0926 at 955.015 kb on - strand, within Dsui_0926 at 955.028 kb on + strand, within Dsui_0926 at 955.045 kb on + strand, within Dsui_0926 at 955.053 kb on - strand, within Dsui_0926 at 955.211 kb on + strand, within Dsui_0926 at 955.216 kb on - strand, within Dsui_0926 at 955.275 kb on + strand, within Dsui_0926 at 955.323 kb on + strand at 955.385 kb on - strand at 955.410 kb on + strand at 955.416 kb on + strand at 955.418 kb on - strand at 955.575 kb on - strand, within Dsui_0927 at 955.576 kb on - strand, within Dsui_0927 at 955.677 kb on + strand, within Dsui_0927 at 955.685 kb on - strand, within Dsui_0927 at 955.799 kb on + strand at 955.812 kb on - strand at 955.822 kb on - strand at 955.921 kb on + strand at 955.975 kb on + strand at 955.988 kb on - strand at 956.006 kb on + strand at 956.006 kb on + strand at 956.014 kb on + strand at 956.105 kb on + strand at 956.202 kb on - strand, within Dsui_0928 at 956.217 kb on + strand, within Dsui_0928 at 956.274 kb on - strand, within Dsui_0928 at 956.295 kb on - strand, within Dsui_0928 at 956.301 kb on + strand, within Dsui_0928 at 956.346 kb on + strand, within Dsui_0928 at 956.376 kb on + strand, within Dsui_0928 at 956.388 kb on - strand, within Dsui_0928 at 956.403 kb on - strand, within Dsui_0928 at 956.500 kb on - strand, within Dsui_0928 at 956.670 kb on + strand at 956.692 kb on - strand, within Dsui_0928 at 956.719 kb on + strand, within Dsui_0928 at 956.817 kb on - strand, within Dsui_0928
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 954,659 - +0.5 954,814 + Dsui_0926 0.55 -0.2 954,834 + Dsui_0926 0.56 -0.5 954,992 - Dsui_0926 0.67 -1.1 955,015 - Dsui_0926 0.69 +0.5 955,028 + Dsui_0926 0.70 -1.1 955,045 + Dsui_0926 0.71 +2.1 955,053 - Dsui_0926 0.72 -2.1 955,211 + Dsui_0926 0.83 -2.2 955,216 - Dsui_0926 0.83 -1.5 955,275 + Dsui_0926 0.88 -0.3 955,323 + -0.2 955,385 - -0.4 955,410 + +0.5 955,416 + +1.0 955,418 - -0.7 955,575 - Dsui_0927 0.32 -0.2 955,576 - Dsui_0927 0.33 +1.3 955,677 + Dsui_0927 0.59 -2.9 955,685 - Dsui_0927 0.61 +1.4 955,799 + -1.6 955,812 - -1.0 955,822 - -0.5 955,921 + +0.5 955,975 + +0.5 955,988 - -0.5 956,006 + +0.5 956,006 + -1.0 956,014 + -0.5 956,105 + +0.5 956,202 - Dsui_0928 0.13 -2.0 956,217 + Dsui_0928 0.14 +0.5 956,274 - Dsui_0928 0.18 +0.5 956,295 - Dsui_0928 0.20 -0.0 956,301 + Dsui_0928 0.20 -3.3 956,346 + Dsui_0928 0.23 -0.9 956,376 + Dsui_0928 0.25 -0.5 956,388 - Dsui_0928 0.26 +0.5 956,403 - Dsui_0928 0.27 +0.5 956,500 - Dsui_0928 0.34 +0.5 956,670 + +0.5 956,692 - Dsui_0928 0.48 -0.5 956,719 + Dsui_0928 0.50 -0.5 956,817 - Dsui_0928 0.56 -1.3
Or see this region's nucleotide sequence