Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0868 and Dsui_0869 are separated by 3 nucleotides Dsui_0869 and Dsui_0870 overlap by 4 nucleotides Dsui_0870 and Dsui_0871 are separated by 111 nucleotides Dsui_0871 and Dsui_0872 are separated by 137 nucleotides Dsui_0872 and Dsui_0873 are separated by 55 nucleotides
Dsui_0868: Dsui_0868 - hypothetical protein, at 884,644 to 884,985
_0868
Dsui_0869: Dsui_0869 - hypothetical protein, at 884,989 to 885,297
_0869
Dsui_0870: Dsui_0870 - putative membrane protein, at 885,294 to 885,701
_0870
Dsui_0871: Dsui_0871 - hypothetical protein, at 885,813 to 886,133
_0871
Dsui_0872: Dsui_0872 - exodeoxyribonuclease III, at 886,271 to 887,056
_0872
Dsui_0873: Dsui_0873 - orotate phosphoribosyltransferase, at 887,112 to 887,756
_0873
Position (kb) 885
886
887 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 884.872 kb on + strand, within Dsui_0868 at 884.900 kb on + strand, within Dsui_0868 at 884.937 kb on + strand, within Dsui_0868 at 884.995 kb on - strand at 884.995 kb on - strand at 885.144 kb on + strand, within Dsui_0869 at 885.154 kb on + strand, within Dsui_0869 at 885.157 kb on - strand, within Dsui_0869 at 885.191 kb on - strand, within Dsui_0869 at 885.211 kb on + strand, within Dsui_0869 at 885.327 kb on - strand at 885.341 kb on + strand, within Dsui_0870 at 885.355 kb on + strand, within Dsui_0870 at 885.436 kb on - strand, within Dsui_0870 at 885.445 kb on + strand, within Dsui_0870 at 885.521 kb on + strand, within Dsui_0870 at 885.543 kb on + strand at 885.610 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.627 kb on + strand, within Dsui_0870 at 885.756 kb on - strand at 885.797 kb on + strand at 885.899 kb on + strand, within Dsui_0871 at 886.104 kb on - strand at 886.123 kb on - strand at 886.179 kb on + strand at 886.186 kb on + strand at 886.187 kb on - strand at 886.187 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.276 kb on - strand at 886.298 kb on + strand at 886.305 kb on - strand at 886.327 kb on + strand at 886.337 kb on + strand at 886.407 kb on + strand at 886.421 kb on - strand, within Dsui_0872 at 886.442 kb on + strand, within Dsui_0872 at 886.450 kb on - strand, within Dsui_0872 at 886.450 kb on - strand, within Dsui_0872 at 886.478 kb on + strand, within Dsui_0872 at 886.503 kb on + strand, within Dsui_0872 at 886.513 kb on + strand, within Dsui_0872 at 886.534 kb on - strand, within Dsui_0872 at 886.688 kb on - strand, within Dsui_0872 at 886.802 kb on + strand, within Dsui_0872 at 886.839 kb on - strand, within Dsui_0872 at 886.841 kb on + strand, within Dsui_0872 at 886.854 kb on - strand, within Dsui_0872 at 886.889 kb on - strand, within Dsui_0872 at 886.935 kb on - strand, within Dsui_0872 at 886.935 kb on - strand, within Dsui_0872 at 886.956 kb on + strand, within Dsui_0872 at 887.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 884,872 + Dsui_0868 0.67 -2.1 884,900 + Dsui_0868 0.75 -0.1 884,937 + Dsui_0868 0.86 -1.5 884,995 - -0.1 884,995 - +0.0 885,144 + Dsui_0869 0.50 -2.1 885,154 + Dsui_0869 0.53 -2.1 885,157 - Dsui_0869 0.54 -0.9 885,191 - Dsui_0869 0.65 -1.1 885,211 + Dsui_0869 0.72 -2.3 885,327 - -0.8 885,341 + Dsui_0870 0.12 +0.5 885,355 + Dsui_0870 0.15 -1.1 885,436 - Dsui_0870 0.35 -2.8 885,445 + Dsui_0870 0.37 +0.5 885,521 + Dsui_0870 0.56 -0.5 885,543 + +0.5 885,610 - Dsui_0870 0.77 -2.4 885,615 - Dsui_0870 0.79 -2.4 885,615 - Dsui_0870 0.79 -2.7 885,627 + Dsui_0870 0.82 +0.5 885,756 - -0.0 885,797 + -0.2 885,899 + Dsui_0871 0.27 -1.8 886,104 - -3.7 886,123 - -4.0 886,179 + -2.8 886,186 + -1.5 886,187 - -1.4 886,187 - -2.9 886,192 - -0.7 886,192 - -0.8 886,192 - -1.1 886,276 - -0.3 886,298 + -1.1 886,305 - +0.0 886,327 + +0.5 886,337 + +0.5 886,407 + +0.5 886,421 - Dsui_0872 0.19 -0.1 886,442 + Dsui_0872 0.22 -0.5 886,450 - Dsui_0872 0.23 -0.3 886,450 - Dsui_0872 0.23 +0.2 886,478 + Dsui_0872 0.26 +0.5 886,503 + Dsui_0872 0.30 +0.5 886,513 + Dsui_0872 0.31 +0.5 886,534 - Dsui_0872 0.33 -0.2 886,688 - Dsui_0872 0.53 -0.4 886,802 + Dsui_0872 0.68 -0.5 886,839 - Dsui_0872 0.72 -0.6 886,841 + Dsui_0872 0.73 +0.5 886,854 - Dsui_0872 0.74 -0.2 886,889 - Dsui_0872 0.79 -0.1 886,935 - Dsui_0872 0.84 -0.2 886,935 - Dsui_0872 0.84 -0.4 886,956 + Dsui_0872 0.87 -1.5 887,007 - -0.5
Or see this region's nucleotide sequence