Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0654 and Dsui_0655 are separated by 125 nucleotides Dsui_0655 and Dsui_0656 are separated by 57 nucleotides Dsui_0656 and Dsui_0657 are separated by 33 nucleotides
Dsui_0654: Dsui_0654 - hypothetical protein, at 647,870 to 648,325
_0654
Dsui_0655: Dsui_0655 - putative membrane protein, at 648,451 to 649,077
_0655
Dsui_0656: Dsui_0656 - chemotaxis protein histidine kinase-like protein, at 649,135 to 655,254
_0656
Dsui_0657: Dsui_0657 - methyl-accepting chemotaxis protein, at 655,288 to 657,486
_0657
Position (kb) 649
650
651
652
653
654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 648.138 kb on + strand, within Dsui_0654 at 648.144 kb on - strand at 648.185 kb on + strand, within Dsui_0654 at 648.190 kb on + strand, within Dsui_0654 at 648.193 kb on - strand, within Dsui_0654 at 648.211 kb on + strand, within Dsui_0654 at 648.225 kb on + strand at 648.226 kb on - strand, within Dsui_0654 at 648.274 kb on + strand, within Dsui_0654 at 648.282 kb on - strand at 648.399 kb on + strand at 648.421 kb on - strand at 648.421 kb on - strand at 648.423 kb on + strand at 648.448 kb on + strand at 648.497 kb on + strand at 648.505 kb on - strand at 648.582 kb on + strand, within Dsui_0655 at 648.592 kb on + strand, within Dsui_0655 at 648.600 kb on - strand, within Dsui_0655 at 648.622 kb on + strand, within Dsui_0655 at 648.675 kb on + strand, within Dsui_0655 at 648.712 kb on - strand, within Dsui_0655 at 648.910 kb on + strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.004 kb on - strand, within Dsui_0655 at 649.006 kb on + strand, within Dsui_0655 at 649.014 kb on - strand, within Dsui_0655 at 649.072 kb on + strand at 649.073 kb on + strand at 649.080 kb on - strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.157 kb on + strand at 649.211 kb on - strand at 649.215 kb on + strand at 649.216 kb on - strand at 649.243 kb on - strand at 649.334 kb on - strand at 649.395 kb on + strand at 649.403 kb on - strand at 649.478 kb on + strand at 649.486 kb on - strand at 649.529 kb on + strand at 649.546 kb on + strand at 649.610 kb on - strand at 649.783 kb on - strand, within Dsui_0656 at 649.804 kb on + strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.852 kb on - strand, within Dsui_0656 at 649.853 kb on + strand, within Dsui_0656 at 649.867 kb on + strand, within Dsui_0656 at 649.885 kb on - strand, within Dsui_0656 at 649.913 kb on + strand, within Dsui_0656 at 649.973 kb on + strand, within Dsui_0656 at 649.997 kb on - strand, within Dsui_0656 at 650.332 kb on - strand, within Dsui_0656 at 650.515 kb on - strand, within Dsui_0656 at 650.589 kb on - strand, within Dsui_0656 at 650.641 kb on + strand at 651.166 kb on + strand at 651.169 kb on - strand, within Dsui_0656 at 651.436 kb on - strand, within Dsui_0656 at 651.494 kb on + strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.502 kb on - strand, within Dsui_0656 at 651.638 kb on - strand, within Dsui_0656 at 651.730 kb on - strand, within Dsui_0656 at 651.776 kb on - strand, within Dsui_0656 at 651.839 kb on - strand, within Dsui_0656 at 651.840 kb on - strand, within Dsui_0656 at 651.889 kb on - strand, within Dsui_0656 at 651.919 kb on - strand, within Dsui_0656 at 651.923 kb on + strand, within Dsui_0656 at 651.923 kb on + strand, within Dsui_0656 at 651.959 kb on + strand, within Dsui_0656 at 651.967 kb on + strand, within Dsui_0656 at 652.080 kb on - strand, within Dsui_0656 at 652.503 kb on - strand, within Dsui_0656 at 652.790 kb on - strand, within Dsui_0656 at 652.941 kb on + strand at 652.949 kb on - strand, within Dsui_0656 at 652.949 kb on - strand, within Dsui_0656 at 652.971 kb on + strand at 653.103 kb on - strand, within Dsui_0656 at 653.130 kb on + strand at 653.143 kb on - strand, within Dsui_0656 at 653.191 kb on - strand, within Dsui_0656 at 653.246 kb on + strand, within Dsui_0656 at 653.339 kb on + strand at 653.339 kb on + strand at 653.347 kb on - strand, within Dsui_0656 at 653.468 kb on + strand, within Dsui_0656 at 653.877 kb on + strand at 653.885 kb on - strand, within Dsui_0656 at 653.900 kb on - strand, within Dsui_0656 at 653.969 kb on + strand at 653.977 kb on - strand, within Dsui_0656 at 654.125 kb on - strand, within Dsui_0656 at 654.171 kb on + strand at 654.174 kb on - strand, within Dsui_0656 at 654.287 kb on + strand at 654.356 kb on + strand, within Dsui_0656 at 654.402 kb on + strand at 654.414 kb on + strand at 654.589 kb on - strand, within Dsui_0656 at 654.758 kb on + strand at 654.791 kb on + strand at 654.824 kb on + strand at 654.882 kb on + strand at 655.011 kb on + strand at 655.022 kb on + strand at 655.051 kb on - strand at 655.070 kb on - strand at 655.213 kb on - strand at 655.224 kb on - strand at 655.252 kb on + strand at 655.304 kb on - strand at 655.304 kb on - strand at 655.384 kb on + strand at 655.491 kb on + strand at 655.749 kb on + strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.817 kb on - strand, within Dsui_0657 at 655.868 kb on - strand, within Dsui_0657 at 655.901 kb on + strand at 655.920 kb on - strand, within Dsui_0657 at 655.996 kb on + strand, within Dsui_0657 at 656.035 kb on - strand, within Dsui_0657 at 656.085 kb on - strand, within Dsui_0657 at 656.089 kb on + strand, within Dsui_0657 at 656.102 kb on - strand, within Dsui_0657 at 656.131 kb on - strand, within Dsui_0657 at 656.137 kb on - strand, within Dsui_0657 at 656.220 kb on - strand, within Dsui_0657
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 648,138 + Dsui_0654 0.59 -1.1 648,144 - +0.5 648,185 + Dsui_0654 0.69 -1.1 648,190 + Dsui_0654 0.70 +0.5 648,193 - Dsui_0654 0.71 +0.5 648,211 + Dsui_0654 0.75 +0.5 648,225 + +0.5 648,226 - Dsui_0654 0.78 -0.5 648,274 + Dsui_0654 0.89 -1.1 648,282 - -1.1 648,399 + +0.5 648,421 - -2.3 648,421 - +0.5 648,423 + -1.9 648,448 + +0.5 648,497 + -1.1 648,505 - -0.5 648,582 + Dsui_0655 0.21 -0.9 648,592 + Dsui_0655 0.22 -0.3 648,600 - Dsui_0655 0.24 +0.5 648,622 + Dsui_0655 0.27 +0.9 648,675 + Dsui_0655 0.36 -0.6 648,712 - Dsui_0655 0.42 -2.3 648,910 + Dsui_0655 0.73 -0.1 649,004 - Dsui_0655 0.88 +0.5 649,004 - Dsui_0655 0.88 -2.0 649,006 + Dsui_0655 0.89 +0.5 649,014 - Dsui_0655 0.90 -0.5 649,072 + -0.8 649,073 + -0.6 649,080 - -0.5 649,157 + -2.0 649,157 + -0.5 649,157 + +0.5 649,211 - -0.4 649,215 + -1.5 649,216 - -0.3 649,243 - -0.4 649,334 - -1.5 649,395 + -0.5 649,403 - -0.8 649,478 + -0.5 649,486 - -0.2 649,529 + +0.5 649,546 + -1.1 649,610 - -0.2 649,783 - Dsui_0656 0.11 -0.6 649,804 + Dsui_0656 0.11 -1.9 649,852 - Dsui_0656 0.12 +0.2 649,852 - Dsui_0656 0.12 +0.0 649,853 + Dsui_0656 0.12 -2.1 649,867 + Dsui_0656 0.12 +0.0 649,885 - Dsui_0656 0.12 -0.0 649,913 + Dsui_0656 0.13 -0.5 649,973 + Dsui_0656 0.14 +0.5 649,997 - Dsui_0656 0.14 -1.0 650,332 - Dsui_0656 0.20 -0.1 650,515 - Dsui_0656 0.23 +0.1 650,589 - Dsui_0656 0.24 +0.3 650,641 + -1.5 651,166 + -1.5 651,169 - Dsui_0656 0.33 -0.1 651,436 - Dsui_0656 0.38 -0.3 651,494 + Dsui_0656 0.39 -2.4 651,502 - Dsui_0656 0.39 -0.1 651,502 - Dsui_0656 0.39 -0.2 651,502 - Dsui_0656 0.39 +0.1 651,638 - Dsui_0656 0.41 -0.2 651,730 - Dsui_0656 0.42 +0.2 651,776 - Dsui_0656 0.43 -0.5 651,839 - Dsui_0656 0.44 -0.6 651,840 - Dsui_0656 0.44 -0.2 651,889 - Dsui_0656 0.45 -0.2 651,919 - Dsui_0656 0.45 -0.4 651,923 + Dsui_0656 0.46 +0.5 651,923 + Dsui_0656 0.46 +0.5 651,959 + Dsui_0656 0.46 +0.5 651,967 + Dsui_0656 0.46 -1.1 652,080 - Dsui_0656 0.48 +0.0 652,503 - Dsui_0656 0.55 +0.2 652,790 - Dsui_0656 0.60 -0.3 652,941 + -0.5 652,949 - Dsui_0656 0.62 -0.7 652,949 - Dsui_0656 0.62 -0.2 652,971 + -1.1 653,103 - Dsui_0656 0.65 +0.5 653,130 + +2.0 653,143 - Dsui_0656 0.65 +0.2 653,191 - Dsui_0656 0.66 -0.0 653,246 + Dsui_0656 0.67 -1.5 653,339 + -0.5 653,339 + -0.5 653,347 - Dsui_0656 0.69 -0.1 653,468 + Dsui_0656 0.71 +0.5 653,877 + -0.5 653,885 - Dsui_0656 0.78 -0.3 653,900 - Dsui_0656 0.78 -0.8 653,969 + +0.5 653,977 - Dsui_0656 0.79 +0.0 654,125 - Dsui_0656 0.82 -0.1 654,171 + +1.0 654,174 - Dsui_0656 0.82 -0.1 654,287 + +1.5 654,356 + Dsui_0656 0.85 -2.1 654,402 + +0.9 654,414 + -0.6 654,589 - Dsui_0656 0.89 -0.1 654,758 + -0.4 654,791 + +0.4 654,824 + -0.6 654,882 + -1.2 655,011 + -1.1 655,022 + -1.4 655,051 - +0.3 655,070 - -0.7 655,213 - -0.3 655,224 - -0.1 655,252 + -2.1 655,304 - -1.2 655,304 - -0.8 655,384 + +1.1 655,491 + +0.4 655,749 + Dsui_0657 0.21 -0.6 655,817 - Dsui_0657 0.24 -0.2 655,817 - Dsui_0657 0.24 +0.3 655,868 - Dsui_0657 0.26 -0.2 655,901 + +0.4 655,920 - Dsui_0657 0.29 +0.0 655,996 + Dsui_0657 0.32 -0.2 656,035 - Dsui_0657 0.34 +1.1 656,085 - Dsui_0657 0.36 +0.2 656,089 + Dsui_0657 0.36 -1.3 656,102 - Dsui_0657 0.37 -0.7 656,131 - Dsui_0657 0.38 +0.2 656,137 - Dsui_0657 0.39 -0.1 656,220 - Dsui_0657 0.42 +0.2
Or see this region's nucleotide sequence