Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0595 and Dsui_0596 overlap by 8 nucleotides Dsui_0596 and Dsui_0597 are separated by 5 nucleotides Dsui_0597 and Dsui_0598 are separated by 81 nucleotides Dsui_0598 and Dsui_0599 are separated by 136 nucleotides
Dsui_0595: Dsui_0595 - pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 592,363 to 592,884
_0595
Dsui_0596: Dsui_0596 - aspartate carbamoyltransferase, at 592,877 to 593,860
_0596
Dsui_0597: Dsui_0597 - dihydroorotase, multifunctional complex type, at 593,866 to 595,110
_0597
Dsui_0598: Dsui_0598 - hypothetical protein, at 595,192 to 595,494
_0598
Dsui_0599: Dsui_0599 - response regulator of the LytR/AlgR family, at 595,631 to 596,344
_0599
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -1
0
1 at 595.104 kb on + strand at 595.288 kb on + strand, within Dsui_0598 at 595.292 kb on + strand, within Dsui_0598 at 595.297 kb on + strand, within Dsui_0598 at 595.305 kb on - strand, within Dsui_0598 at 595.399 kb on - strand, within Dsui_0598 at 595.539 kb on - strand at 595.751 kb on + strand, within Dsui_0599 at 595.795 kb on - strand at 595.928 kb on + strand, within Dsui_0599 at 596.051 kb on + strand, within Dsui_0599 at 596.069 kb on + strand, within Dsui_0599 at 596.088 kb on - strand, within Dsui_0599 at 596.105 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599 at 596.107 kb on + strand, within Dsui_0599
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 595,104 + -0.3 595,288 + Dsui_0598 0.32 -1.4 595,292 + Dsui_0598 0.33 -0.4 595,297 + Dsui_0598 0.35 -1.4 595,305 - Dsui_0598 0.37 -0.4 595,399 - Dsui_0598 0.68 -1.2 595,539 - +1.4 595,751 + Dsui_0599 0.17 +0.4 595,795 - +1.4 595,928 + Dsui_0599 0.42 -0.6 596,051 + Dsui_0599 0.59 -0.6 596,069 + Dsui_0599 0.61 -1.4 596,088 - Dsui_0599 0.64 -0.2 596,105 + Dsui_0599 0.66 +0.4 596,107 + Dsui_0599 0.67 -0.2 596,107 + Dsui_0599 0.67 -1.2 596,107 + Dsui_0599 0.67 -0.6 596,107 + Dsui_0599 0.67 -0.6 596,107 + Dsui_0599 0.67 -1.6 596,107 + Dsui_0599 0.67 +0.4 596,107 + Dsui_0599 0.67 -1.6 596,107 + Dsui_0599 0.67 -0.6
Or see this region's nucleotide sequence