Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0575 and Dsui_0576 are separated by 21 nucleotides Dsui_0576 and Dsui_0577 overlap by 8 nucleotides Dsui_0577 and Dsui_0578 are separated by 14 nucleotides
Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273
_0575
Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140
_0576
Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465
_0577
Dsui_0578: Dsui_0578 - homocitrate synthase NifV, at 575,480 to 576,634
_0578
Position (kb) 575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 574.155 kb on - strand, within Dsui_0575 at 574.202 kb on - strand at 574.273 kb on + strand at 574.283 kb on + strand at 574.301 kb on - strand at 574.341 kb on + strand at 574.344 kb on - strand at 574.349 kb on - strand at 574.360 kb on - strand at 574.362 kb on + strand at 574.461 kb on - strand, within Dsui_0576 at 574.519 kb on + strand, within Dsui_0576 at 574.591 kb on - strand, within Dsui_0576 at 574.592 kb on - strand, within Dsui_0576 at 575.106 kb on + strand at 575.116 kb on + strand at 575.124 kb on - strand at 575.135 kb on + strand at 575.150 kb on + strand at 575.150 kb on + strand at 575.195 kb on - strand, within Dsui_0577 at 575.329 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.467 kb on + strand at 575.470 kb on - strand at 575.556 kb on - strand at 575.578 kb on - strand at 575.604 kb on - strand, within Dsui_0578 at 575.628 kb on - strand, within Dsui_0578 at 575.706 kb on + strand, within Dsui_0578 at 575.962 kb on + strand, within Dsui_0578 at 575.977 kb on - strand, within Dsui_0578 at 575.982 kb on + strand, within Dsui_0578 at 575.990 kb on - strand, within Dsui_0578 at 576.216 kb on - strand, within Dsui_0578 at 576.271 kb on - strand, within Dsui_0578 at 576.399 kb on - strand, within Dsui_0578 at 576.424 kb on + strand, within Dsui_0578 at 576.431 kb on - strand, within Dsui_0578 at 576.450 kb on - strand, within Dsui_0578
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 574,155 - Dsui_0575 0.89 -0.6 574,202 - -0.6 574,273 + -1.2 574,283 + +0.4 574,301 - -1.2 574,341 + +0.4 574,344 - -0.6 574,349 - -1.6 574,360 - -1.9 574,362 + -0.6 574,461 - Dsui_0576 0.20 +0.4 574,519 + Dsui_0576 0.26 -1.6 574,591 - Dsui_0576 0.35 -1.6 574,592 - Dsui_0576 0.35 +0.4 575,106 + -1.6 575,116 + +0.4 575,124 - +0.4 575,135 + -1.2 575,150 + +0.4 575,150 + +0.4 575,195 - Dsui_0577 0.19 -2.8 575,329 + Dsui_0577 0.59 -1.2 575,348 + Dsui_0577 0.65 +0.4 575,348 + Dsui_0577 0.65 +0.4 575,467 + -0.6 575,470 - -2.1 575,556 - -1.2 575,578 - -0.6 575,604 - Dsui_0578 0.11 -0.6 575,628 - Dsui_0578 0.13 +0.4 575,706 + Dsui_0578 0.20 +0.4 575,962 + Dsui_0578 0.42 -2.2 575,977 - Dsui_0578 0.43 -0.6 575,982 + Dsui_0578 0.43 -0.6 575,990 - Dsui_0578 0.44 -1.9 576,216 - Dsui_0578 0.64 -1.2 576,271 - Dsui_0578 0.68 -1.2 576,399 - Dsui_0578 0.80 +0.4 576,424 + Dsui_0578 0.82 -1.9 576,431 - Dsui_0578 0.82 -0.6 576,450 - Dsui_0578 0.84 +0.4
Or see this region's nucleotide sequence