Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0405 and Dsui_0406 are separated by 9 nucleotides Dsui_0406 and Dsui_0407 are separated by 9 nucleotides Dsui_0407 and Dsui_0408 are separated by 65 nucleotides
Dsui_0405: Dsui_0405 - type I secretion outer membrane protein, TolC family, at 403,832 to 405,175
_0405
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 404.603 kb on - strand, within Dsui_0405 at 404.623 kb on - strand, within Dsui_0405 at 404.692 kb on - strand, within Dsui_0405 at 404.702 kb on + strand, within Dsui_0405 at 404.759 kb on - strand, within Dsui_0405 at 404.787 kb on - strand, within Dsui_0405 at 404.820 kb on + strand, within Dsui_0405 at 404.864 kb on + strand at 404.875 kb on + strand, within Dsui_0405 at 404.909 kb on - strand, within Dsui_0405 at 404.914 kb on - strand, within Dsui_0405 at 404.959 kb on - strand, within Dsui_0405 at 404.968 kb on - strand, within Dsui_0405 at 404.979 kb on + strand, within Dsui_0405 at 405.003 kb on - strand, within Dsui_0405 at 405.045 kb on - strand at 405.141 kb on + strand at 405.181 kb on + strand at 405.189 kb on - strand at 405.189 kb on - strand at 405.191 kb on - strand at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407 at 406.345 kb on + strand at 406.394 kb on - strand at 406.451 kb on - strand at 406.498 kb on + strand at 406.571 kb on - strand, within Dsui_0408 at 406.613 kb on - strand, within Dsui_0408 at 406.713 kb on + strand, within Dsui_0408 at 406.799 kb on + strand, within Dsui_0408 at 406.812 kb on + strand, within Dsui_0408 at 406.838 kb on + strand, within Dsui_0408 at 406.844 kb on - strand, within Dsui_0408 at 406.846 kb on - strand, within Dsui_0408 at 406.856 kb on - strand, within Dsui_0408 at 406.872 kb on + strand at 406.907 kb on - strand, within Dsui_0408 at 406.946 kb on - strand, within Dsui_0408 at 406.980 kb on + strand, within Dsui_0408 at 407.103 kb on - strand, within Dsui_0408 at 407.151 kb on - strand, within Dsui_0408 at 407.162 kb on + strand at 407.180 kb on - strand, within Dsui_0408 at 407.180 kb on - strand, within Dsui_0408
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 404,603 - Dsui_0405 0.57 -0.2 404,623 - Dsui_0405 0.59 +0.6 404,692 - Dsui_0405 0.64 -0.1 404,702 + Dsui_0405 0.65 -2.1 404,759 - Dsui_0405 0.69 +0.0 404,787 - Dsui_0405 0.71 -0.1 404,820 + Dsui_0405 0.74 +0.4 404,864 + +0.4 404,875 + Dsui_0405 0.78 -0.6 404,909 - Dsui_0405 0.80 -0.0 404,914 - Dsui_0405 0.81 +0.4 404,959 - Dsui_0405 0.84 +0.2 404,968 - Dsui_0405 0.85 +0.1 404,979 + Dsui_0405 0.85 +0.4 405,003 - Dsui_0405 0.87 -0.1 405,045 - +0.1 405,141 + -1.9 405,181 + +0.4 405,189 - -0.1 405,189 - -0.1 405,191 - +0.2 405,286 - Dsui_0406 0.31 -0.4 405,359 + Dsui_0406 0.54 -1.9 405,367 - Dsui_0406 0.56 -0.3 405,683 - Dsui_0407 0.25 -1.6 406,345 + +0.4 406,394 - +0.1 406,451 - -0.3 406,498 + -0.6 406,571 - Dsui_0408 0.10 -0.1 406,613 - Dsui_0408 0.11 -0.0 406,713 + Dsui_0408 0.14 -0.6 406,799 + Dsui_0408 0.17 -1.1 406,812 + Dsui_0408 0.18 -0.6 406,838 + Dsui_0408 0.18 -1.9 406,844 - Dsui_0408 0.19 -0.0 406,846 - Dsui_0408 0.19 +0.0 406,856 - Dsui_0408 0.19 +0.3 406,872 + +0.4 406,907 - Dsui_0408 0.21 -0.0 406,946 - Dsui_0408 0.22 -0.1 406,980 + Dsui_0408 0.23 -3.5 407,103 - Dsui_0408 0.27 -0.5 407,151 - Dsui_0408 0.28 +0.0 407,162 + +0.4 407,180 - Dsui_0408 0.29 -0.2 407,180 - Dsui_0408 0.29 -0.2
Or see this region's nucleotide sequence