Strain Fitness in Dechlorosoma suillum PS around Dsui_0275

Experiment: ALP with nitrite 0.45 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0272 and Dsui_0273 are separated by 9 nucleotidesDsui_0273 and Dsui_0274 are separated by 10 nucleotidesDsui_0274 and Dsui_0275 are separated by 216 nucleotidesDsui_0275 and Dsui_0276 overlap by 4 nucleotidesDsui_0276 and Dsui_0277 are separated by 9 nucleotidesDsui_0277 and Dsui_0278 are separated by 10 nucleotides Dsui_0272: Dsui_0272 - osmosensitive K+ channel histidine kinase, at 273,118 to 275,814 _0272 Dsui_0273: Dsui_0273 - hypothetical protein, at 275,824 to 276,000 _0273 Dsui_0274: Dsui_0274 - hypothetical protein, at 276,011 to 276,313 _0274 Dsui_0275: Dsui_0275 - conserved hypothetical protein, proteobacterial, at 276,530 to 277,366 _0275 Dsui_0276: Dsui_0276 - hypothetical protein, at 277,363 to 277,503 _0276 Dsui_0277: Dsui_0277 - K+-transporting ATPase, C subunit, at 277,513 to 278,088 _0277 Dsui_0278: Dsui_0278 - K+-transporting ATPase, B subunit, at 278,099 to 280,177 _0278 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1at 275.548 kb on + strandat 275.582 kb on + strandat 275.589 kb on - strandat 275.600 kb on - strandat 275.637 kb on - strandat 275.697 kb on - strandat 275.743 kb on + strandat 275.855 kb on - strand, within Dsui_0273at 275.855 kb on - strand, within Dsui_0273at 276.002 kb on + strandat 276.030 kb on - strandat 276.095 kb on - strand, within Dsui_0274at 276.374 kb on + strandat 276.464 kb on + strandat 276.464 kb on + strandat 276.485 kb on + strandat 276.582 kb on - strandat 276.811 kb on + strand, within Dsui_0275at 276.827 kb on + strandat 276.860 kb on - strandat 276.895 kb on + strand, within Dsui_0275at 276.897 kb on - strand, within Dsui_0275at 276.903 kb on - strand, within Dsui_0275at 276.903 kb on - strandat 276.903 kb on - strandat 276.934 kb on + strandat 276.942 kb on - strand, within Dsui_0275at 277.035 kb on - strand, within Dsui_0275at 277.058 kb on - strandat 277.058 kb on - strand, within Dsui_0275at 277.079 kb on + strand, within Dsui_0275at 277.161 kb on - strand, within Dsui_0275at 277.193 kb on + strandat 277.222 kb on + strandat 277.225 kb on - strandat 277.225 kb on - strand, within Dsui_0275at 277.263 kb on - strandat 277.280 kb on + strand, within Dsui_0275at 277.350 kb on - strandat 277.561 kb on - strandat 277.595 kb on + strandat 277.711 kb on + strandat 277.763 kb on + strandat 277.819 kb on - strand, within Dsui_0277at 277.866 kb on - strand, within Dsui_0277at 277.967 kb on + strand, within Dsui_0277at 278.021 kb on - strandat 278.049 kb on + strandat 278.062 kb on - strandat 278.102 kb on + strandat 278.105 kb on - strandat 278.107 kb on + strandat 278.161 kb on - strandat 278.163 kb on + strandat 278.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM
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275,548 + +0.5
275,582 + -0.5
275,589 - -0.5
275,600 - -1.5
275,637 - -0.5
275,697 - -1.1
275,743 + -0.5
275,855 - Dsui_0273 0.18 +0.5
275,855 - Dsui_0273 0.18 +0.5
276,002 + -1.1
276,030 - +0.5
276,095 - Dsui_0274 0.28 -1.8
276,374 + +0.5
276,464 + -1.5
276,464 + -1.5
276,485 + -0.5
276,582 - +0.5
276,811 + Dsui_0275 0.34 -1.5
276,827 + +0.5
276,860 - -0.5
276,895 + Dsui_0275 0.44 +0.5
276,897 - Dsui_0275 0.44 +0.5
276,903 - Dsui_0275 0.45 +0.5
276,903 - +0.5
276,903 - +0.5
276,934 + +0.5
276,942 - Dsui_0275 0.49 -0.5
277,035 - Dsui_0275 0.60 -1.5
277,058 - +0.5
277,058 - Dsui_0275 0.63 -1.5
277,079 + Dsui_0275 0.66 -1.1
277,161 - Dsui_0275 0.75 +0.5
277,193 + +0.5
277,222 + -0.5
277,225 - +0.5
277,225 - Dsui_0275 0.83 -1.1
277,263 - +0.5
277,280 + Dsui_0275 0.90 +0.5
277,350 - +0.5
277,561 - +0.5
277,595 + +0.5
277,711 + +0.5
277,763 + +0.5
277,819 - Dsui_0277 0.53 +0.5
277,866 - Dsui_0277 0.61 -0.5
277,967 + Dsui_0277 0.79 -1.1
278,021 - -1.1
278,049 + +0.5
278,062 - -0.5
278,102 + +0.5
278,105 - +0.5
278,107 + +0.5
278,161 - -1.1
278,163 + -0.5
278,182 - +0.5

Or see this region's nucleotide sequence