Experiment: ALP with nitrite 0.45 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0023 and Dsui_0024 are separated by 153 nucleotides Dsui_0024 and Dsui_0025 are separated by 250 nucleotides
Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777
_0023
Dsui_0024: Dsui_0024 - cytochrome c556, at 21,931 to 22,377
_0024
Dsui_0025: Dsui_0025 - hypothetical protein, at 22,628 to 23,710
_0025
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 20.974 kb on + strand, within Dsui_0023 at 21.010 kb on - strand, within Dsui_0023 at 21.079 kb on + strand at 21.181 kb on - strand at 21.186 kb on - strand at 21.221 kb on + strand at 21.227 kb on + strand, within Dsui_0023 at 21.286 kb on - strand, within Dsui_0023 at 21.360 kb on + strand at 21.584 kb on - strand at 21.779 kb on - strand at 21.779 kb on - strand at 21.783 kb on + strand at 21.795 kb on - strand at 21.859 kb on - strand at 21.900 kb on + strand at 22.049 kb on - strand at 22.062 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.212 kb on + strand, within Dsui_0024 at 22.220 kb on - strand, within Dsui_0024 at 22.220 kb on - strand at 22.221 kb on - strand at 22.223 kb on + strand, within Dsui_0024 at 22.364 kb on - strand at 22.390 kb on + strand at 22.410 kb on + strand at 22.468 kb on - strand at 22.655 kb on + strand at 22.751 kb on + strand at 22.789 kb on - strand at 22.825 kb on + strand at 22.882 kb on - strand at 22.992 kb on + strand, within Dsui_0025 at 23.197 kb on + strand at 23.322 kb on + strand, within Dsui_0025
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.45 mM remove 20,974 + Dsui_0023 0.32 -1.5 21,010 - Dsui_0023 0.36 -3.4 21,079 + -0.5 21,181 - +0.5 21,186 - -0.5 21,221 + -0.5 21,227 + Dsui_0023 0.54 +0.5 21,286 - Dsui_0023 0.59 +0.5 21,360 + +0.5 21,584 - +0.5 21,779 - -0.5 21,779 - +0.5 21,783 + -1.5 21,795 - -0.5 21,859 - +0.5 21,900 + -2.1 22,049 - -1.8 22,062 + Dsui_0024 0.29 -2.1 22,212 + Dsui_0024 0.63 +0.3 22,212 + Dsui_0024 0.63 -0.4 22,212 + Dsui_0024 0.63 +0.2 22,220 - Dsui_0024 0.65 -1.1 22,220 - -0.5 22,221 - +0.5 22,223 + Dsui_0024 0.65 +0.5 22,364 - +0.5 22,390 + +0.2 22,410 + -0.4 22,468 - -1.5 22,655 + +0.5 22,751 + +0.5 22,789 - +0.5 22,825 + -1.1 22,882 - -1.1 22,992 + Dsui_0025 0.34 +0.5 23,197 + -1.1 23,322 + Dsui_0025 0.64 -2.5
Or see this region's nucleotide sequence