Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0553

Experiment: Thymidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0552 and BT0553 are separated by 114 nucleotidesBT0553 and BT0554 are separated by 362 nucleotides BT0552: BT0552 - glutamate synthase, small subunit (NCBI ptt file), at 678,852 to 680,192 BT0552 BT0553: BT0553 - glutamate synthase, large subunit (NCBI ptt file), at 680,307 to 684,917 BT0553 BT0554: BT0554 - glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file), at 685,280 to 687,124 BT0554 Position (kb) 680 681 682 683 684 685Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 679.588 kb on - strand, within BT0552at 679.694 kb on - strand, within BT0552at 679.792 kb on - strand, within BT0552at 679.794 kb on - strand, within BT0552at 679.796 kb on - strand, within BT0552at 679.818 kb on + strand, within BT0552at 679.908 kb on - strand, within BT0552at 680.111 kb on + strandat 680.114 kb on - strandat 680.203 kb on - strandat 680.217 kb on - strandat 680.217 kb on - strandat 680.234 kb on - strandat 680.238 kb on - strandat 680.297 kb on - strandat 680.311 kb on + strandat 680.325 kb on - strandat 680.388 kb on - strandat 680.395 kb on - strandat 680.441 kb on + strandat 680.442 kb on - strandat 680.665 kb on + strandat 680.685 kb on + strandat 680.686 kb on - strandat 680.753 kb on + strandat 680.845 kb on - strand, within BT0553at 680.978 kb on + strand, within BT0553at 681.054 kb on - strand, within BT0553at 681.067 kb on + strand, within BT0553at 681.146 kb on + strand, within BT0553at 681.366 kb on - strand, within BT0553at 681.366 kb on - strand, within BT0553at 681.371 kb on - strand, within BT0553at 681.753 kb on + strand, within BT0553at 681.853 kb on - strand, within BT0553at 681.962 kb on + strand, within BT0553at 682.142 kb on + strand, within BT0553at 682.259 kb on + strand, within BT0553at 682.380 kb on - strand, within BT0553at 682.450 kb on - strand, within BT0553at 682.450 kb on - strand, within BT0553at 682.707 kb on - strand, within BT0553at 682.784 kb on - strand, within BT0553at 682.824 kb on - strand, within BT0553at 682.825 kb on + strand, within BT0553at 682.936 kb on - strand, within BT0553at 682.936 kb on - strand, within BT0553at 682.959 kb on + strand, within BT0553at 683.017 kb on - strand, within BT0553at 683.023 kb on + strand, within BT0553at 683.124 kb on + strand, within BT0553at 683.149 kb on + strand, within BT0553at 683.156 kb on + strand, within BT0553at 683.208 kb on + strand, within BT0553at 683.353 kb on + strand, within BT0553at 683.354 kb on - strand, within BT0553at 683.354 kb on - strand, within BT0553at 683.358 kb on + strand, within BT0553at 683.444 kb on + strand, within BT0553at 683.460 kb on - strand, within BT0553at 683.576 kb on + strand, within BT0553at 683.581 kb on + strand, within BT0553at 683.798 kb on + strand, within BT0553at 683.879 kb on - strand, within BT0553at 684.062 kb on + strand, within BT0553at 684.119 kb on + strand, within BT0553at 684.234 kb on - strand, within BT0553at 684.250 kb on + strand, within BT0553at 684.288 kb on - strand, within BT0553at 684.291 kb on + strand, within BT0553at 684.293 kb on + strand, within BT0553at 684.499 kb on - strandat 684.537 kb on + strandat 684.563 kb on + strandat 684.677 kb on + strandat 684.677 kb on + strandat 684.741 kb on + strandat 684.745 kb on - strandat 684.830 kb on - strandat 684.830 kb on - strandat 684.842 kb on - strandat 685.276 kb on + strandat 685.277 kb on - strandat 685.279 kb on + strandat 685.298 kb on + strandat 685.298 kb on + strandat 685.300 kb on + strandat 685.407 kb on + strandat 685.586 kb on - strand, within BT0554at 685.685 kb on + strand, within BT0554at 685.834 kb on + strand, within BT0554at 685.835 kb on - strand, within BT0554at 685.882 kb on - strand, within BT0554at 685.895 kb on - strand, within BT0554

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (N)
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679,588 - BT0552 0.55 +0.0
679,694 - BT0552 0.63 -0.7
679,792 - BT0552 0.70 -2.8
679,794 - BT0552 0.70 -1.4
679,796 - BT0552 0.70 -2.9
679,818 + BT0552 0.72 -1.0
679,908 - BT0552 0.79 -1.7
680,111 + -1.8
680,114 - +0.6
680,203 - -2.3
680,217 - +0.0
680,217 - -0.4
680,234 - -1.9
680,238 - -1.0
680,297 - +1.6
680,311 + -0.4
680,325 - -3.4
680,388 - -1.6
680,395 - -1.6
680,441 + -1.0
680,442 - -3.0
680,665 + -0.4
680,685 + -1.0
680,686 - -1.4
680,753 + -1.2
680,845 - BT0553 0.12 -0.4
680,978 + BT0553 0.15 -2.6
681,054 - BT0553 0.16 -1.0
681,067 + BT0553 0.16 -3.1
681,146 + BT0553 0.18 -4.2
681,366 - BT0553 0.23 -7.2
681,366 - BT0553 0.23 +0.6
681,371 - BT0553 0.23 -2.1
681,753 + BT0553 0.31 -3.3
681,853 - BT0553 0.34 -2.1
681,962 + BT0553 0.36 -2.2
682,142 + BT0553 0.40 -0.6
682,259 + BT0553 0.42 -3.5
682,380 - BT0553 0.45 -0.4
682,450 - BT0553 0.46 -2.6
682,450 - BT0553 0.46 +0.6
682,707 - BT0553 0.52 -1.2
682,784 - BT0553 0.54 -4.4
682,824 - BT0553 0.55 +0.0
682,825 + BT0553 0.55 -2.0
682,936 - BT0553 0.57 -0.7
682,936 - BT0553 0.57 +0.6
682,959 + BT0553 0.58 -1.4
683,017 - BT0553 0.59 -1.0
683,023 + BT0553 0.59 -1.7
683,124 + BT0553 0.61 -2.3
683,149 + BT0553 0.62 -1.0
683,156 + BT0553 0.62 +0.0
683,208 + BT0553 0.63 -3.2
683,353 + BT0553 0.66 -6.0
683,354 - BT0553 0.66 -2.0
683,354 - BT0553 0.66 -1.0
683,358 + BT0553 0.66 +0.6
683,444 + BT0553 0.68 -1.4
683,460 - BT0553 0.68 -0.7
683,576 + BT0553 0.71 -0.4
683,581 + BT0553 0.71 -2.4
683,798 + BT0553 0.76 -1.2
683,879 - BT0553 0.77 -1.7
684,062 + BT0553 0.81 +0.0
684,119 + BT0553 0.83 -2.8
684,234 - BT0553 0.85 -1.4
684,250 + BT0553 0.86 -1.4
684,288 - BT0553 0.86 +0.0
684,291 + BT0553 0.86 -1.4
684,293 + BT0553 0.86 -3.2
684,499 - -2.8
684,537 + +0.6
684,563 + -2.0
684,677 + +0.0
684,677 + -2.1
684,741 + -0.7
684,745 - -1.0
684,830 - -0.4
684,830 - -1.8
684,842 - -4.0
685,276 + -1.2
685,277 - -5.4
685,279 + -1.9
685,298 + -3.3
685,298 + +0.0
685,300 + +0.0
685,407 + -2.9
685,586 - BT0554 0.17 -1.6
685,685 + BT0554 0.22 -1.7
685,834 + BT0554 0.30 -1.7
685,835 - BT0554 0.30 -1.4
685,882 - BT0554 0.33 -0.4
685,895 - BT0554 0.33 -1.2

Or see this region's nucleotide sequence