Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5882

Experiment: sodium carbonate 0.0125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium carbonate 0.0125 M
6,700,993	-				-1.4
6,701,218	+		Pf6N2E2_5881	0.20	+0.7
6,701,218	+		Pf6N2E2_5881	0.20	+0.8
6,701,218	+		Pf6N2E2_5881	0.20	-0.1
6,701,219	-		Pf6N2E2_5881	0.20	-0.8
6,701,301	+		Pf6N2E2_5881	0.30	+0.5
6,701,301	+		Pf6N2E2_5881	0.30	+0.4
6,701,302	-		Pf6N2E2_5881	0.30	-0.3
6,701,302	-		Pf6N2E2_5881	0.30	-0.6
6,701,305	+		Pf6N2E2_5881	0.30	-0.5
6,701,305	+		Pf6N2E2_5881	0.30	-0.0
6,701,305	+		Pf6N2E2_5881	0.30	+0.3
6,701,305	+		Pf6N2E2_5881	0.30	-0.4
6,701,305	+		Pf6N2E2_5881	0.30	-0.3
6,701,305	+		Pf6N2E2_5881	0.30	+1.3
6,701,305	+		Pf6N2E2_5881	0.30	+1.4
6,701,306	-		Pf6N2E2_5881	0.31	-0.6
6,701,343	+		Pf6N2E2_5881	0.35	+0.8
6,701,344	-		Pf6N2E2_5881	0.35	-1.5
6,701,461	+		Pf6N2E2_5881	0.49	-0.3
6,701,461	+		Pf6N2E2_5881	0.49	-1.1
6,701,462	-		Pf6N2E2_5881	0.50	-1.0
6,701,462	-		Pf6N2E2_5881	0.50	-0.7
6,701,462	-		Pf6N2E2_5881	0.50	-1.8
6,701,462	-		Pf6N2E2_5881	0.50	-1.4
6,701,536	+		Pf6N2E2_5881	0.59	+0.9
6,701,536	+		Pf6N2E2_5881	0.59	+0.0
6,701,536	+		Pf6N2E2_5881	0.59	+0.0
6,701,536	+		Pf6N2E2_5881	0.59	+0.2
6,701,536	+		Pf6N2E2_5881	0.59	+0.3
6,701,536	+		Pf6N2E2_5881	0.59	+0.2
6,701,537	-		Pf6N2E2_5881	0.59	-1.0
6,701,537	-		Pf6N2E2_5881	0.59	+1.5
6,701,566	+		Pf6N2E2_5881	0.62	+1.1
6,701,566	+		Pf6N2E2_5881	0.62	-0.4
6,701,567	-		Pf6N2E2_5881	0.62	-1.7
6,701,873	-				-0.5
6,701,936	+				-1.1
6,701,936	+				-2.6
6,701,936	+				-0.1
6,701,936	+				-0.9
6,701,936	+				-0.6
6,701,936	+				-1.2
6,701,936	+				+0.9
6,701,936	+				+0.5
6,702,132	+		Pf6N2E2_5882	0.19	+3.5
6,702,133	-		Pf6N2E2_5882	0.19	-1.3
6,702,133	-		Pf6N2E2_5882	0.19	-0.0
6,702,354	-		Pf6N2E2_5882	0.40	-1.2
6,702,354	-		Pf6N2E2_5882	0.40	-2.0
6,702,430	+		Pf6N2E2_5882	0.47	-0.8
6,702,430	+		Pf6N2E2_5882	0.47	-1.3
6,702,452	+		Pf6N2E2_5882	0.49	-1.3
6,702,528	-		Pf6N2E2_5882	0.57	-2.2
6,702,528	-		Pf6N2E2_5882	0.57	-0.4
6,702,528	-		Pf6N2E2_5882	0.57	-0.8
6,702,528	-		Pf6N2E2_5882	0.57	-0.5
6,702,815	+		Pf6N2E2_5882	0.84	+0.8
6,702,935	+				-0.4
6,702,935	+				-0.2
6,702,935	+				-1.3
6,702,935	+				-1.1
6,702,935	+				-0.3
6,702,935	+				-0.6
6,702,936	-				-0.5
6,702,936	-				-1.7
6,702,936	-				-1.1
6,702,937	+				+0.5
6,702,937	+				-0.6
6,702,937	+				-1.6
6,702,937	+				-2.5
6,702,937	+				-1.7
6,703,058	+				+0.5
6,703,058	+				-1.2
6,703,058	+				+0.1
6,703,058	+				-1.5
6,703,058	+				-0.7
6,703,184	-				+0.5
6,703,245	+				-1.0
6,703,245	+				+0.0
6,703,615	+		Pf6N2E2_5883	0.58	-0.6
6,703,884	+				+0.9
6,703,884	+				+0.9
6,703,885	-				+0.1
6,703,885	-				+0.0
6,703,885	-				+0.4
6,703,885	-				+0.7
6,703,885	-				-2.4
6,703,885	-				-0.9
6,703,885	-				+0.4
6,703,885	-				-0.5
6,703,885	-				-0.8
6,703,885	-				+0.2
6,703,893	+				-0.8
6,703,893	+				-0.8
6,703,894	-				-0.7
6,703,894	-				+0.2
6,703,894	-				+0.2
6,703,894	-				+0.9
6,703,959	+				-0.3
6,703,960	-				-0.8
6,703,960	-				+1.3
6,703,960	-				-0.3