Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4581

Experiment: sodium carbonate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4580 and Pf6N2E2_4581 overlap by 8 nucleotidesPf6N2E2_4581 and Pf6N2E2_4582 are separated by 155 nucleotidesPf6N2E2_4582 and Pf6N2E2_4583 are separated by 57 nucleotides Pf6N2E2_4580 - FIG015287: Zinc protease, at 5,310,113 to 5,311,603 _4580 Pf6N2E2_4581 - FIG015547: peptidase, M16 family, at 5,311,596 to 5,312,951 _4581 Pf6N2E2_4582 - hypothetical protein, at 5,313,107 to 5,313,238 _4582 Pf6N2E2_4583 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 5,313,296 to 5,314,729 _4583 Position (kb) 5311 5312 5313Strain fitness (log2 ratio) -2 -1 0 1at 5310.651 kb on + strand, within Pf6N2E2_4580at 5310.954 kb on + strand, within Pf6N2E2_4580at 5310.954 kb on + strand, within Pf6N2E2_4580at 5310.954 kb on + strand, within Pf6N2E2_4580at 5310.954 kb on + strand, within Pf6N2E2_4580at 5310.954 kb on + strand, within Pf6N2E2_4580at 5310.955 kb on - strand, within Pf6N2E2_4580at 5310.970 kb on - strand, within Pf6N2E2_4580at 5311.373 kb on + strand, within Pf6N2E2_4580at 5311.373 kb on + strand, within Pf6N2E2_4580at 5311.373 kb on - strand, within Pf6N2E2_4580at 5311.374 kb on - strand, within Pf6N2E2_4580at 5311.527 kb on + strandat 5311.527 kb on + strandat 5311.528 kb on - strandat 5311.528 kb on - strandat 5311.657 kb on + strandat 5311.657 kb on + strandat 5311.658 kb on - strandat 5311.658 kb on - strandat 5311.658 kb on - strandat 5311.679 kb on + strandat 5311.680 kb on - strandat 5311.798 kb on + strand, within Pf6N2E2_4581at 5311.798 kb on + strand, within Pf6N2E2_4581at 5311.798 kb on + strand, within Pf6N2E2_4581at 5311.798 kb on + strand, within Pf6N2E2_4581at 5311.798 kb on + strand, within Pf6N2E2_4581at 5311.799 kb on - strand, within Pf6N2E2_4581at 5311.799 kb on - strand, within Pf6N2E2_4581at 5311.799 kb on - strand, within Pf6N2E2_4581at 5311.972 kb on + strand, within Pf6N2E2_4581at 5311.973 kb on - strand, within Pf6N2E2_4581at 5311.973 kb on - strand, within Pf6N2E2_4581at 5311.981 kb on + strand, within Pf6N2E2_4581at 5311.981 kb on + strand, within Pf6N2E2_4581at 5311.982 kb on - strand, within Pf6N2E2_4581at 5311.982 kb on - strand, within Pf6N2E2_4581at 5312.255 kb on - strand, within Pf6N2E2_4581at 5312.330 kb on - strand, within Pf6N2E2_4581at 5312.450 kb on - strand, within Pf6N2E2_4581at 5312.608 kb on + strand, within Pf6N2E2_4581at 5312.608 kb on + strand, within Pf6N2E2_4581at 5312.609 kb on - strand, within Pf6N2E2_4581at 5312.609 kb on - strand, within Pf6N2E2_4581at 5312.609 kb on - strand, within Pf6N2E2_4581at 5312.609 kb on - strand, within Pf6N2E2_4581at 5312.611 kb on + strand, within Pf6N2E2_4581at 5312.611 kb on + strand, within Pf6N2E2_4581at 5312.612 kb on - strand, within Pf6N2E2_4581at 5312.612 kb on - strand, within Pf6N2E2_4581at 5312.761 kb on + strand, within Pf6N2E2_4581at 5312.779 kb on + strand, within Pf6N2E2_4581at 5312.779 kb on + strand, within Pf6N2E2_4581at 5312.779 kb on + strand, within Pf6N2E2_4581at 5313.011 kb on + strandat 5313.057 kb on + strandat 5313.240 kb on + strandat 5313.240 kb on + strandat 5313.240 kb on + strandat 5313.240 kb on + strandat 5313.244 kb on + strandat 5313.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium carbonate 0.0125 M
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5,310,651 + Pf6N2E2_4580 0.36 -0.6
5,310,954 + Pf6N2E2_4580 0.56 +0.4
5,310,954 + Pf6N2E2_4580 0.56 -0.0
5,310,954 + Pf6N2E2_4580 0.56 +0.4
5,310,954 + Pf6N2E2_4580 0.56 +0.6
5,310,954 + Pf6N2E2_4580 0.56 +0.5
5,310,955 - Pf6N2E2_4580 0.56 -0.7
5,310,970 - Pf6N2E2_4580 0.57 -0.2
5,311,373 + Pf6N2E2_4580 0.85 +0.1
5,311,373 + Pf6N2E2_4580 0.85 -0.8
5,311,373 - Pf6N2E2_4580 0.85 -0.6
5,311,374 - Pf6N2E2_4580 0.85 -0.6
5,311,527 + -0.2
5,311,527 + -0.4
5,311,528 - +0.4
5,311,528 - -1.3
5,311,657 + -0.3
5,311,657 + -0.1
5,311,658 - +0.7
5,311,658 - -0.2
5,311,658 - -0.8
5,311,679 + +0.9
5,311,680 - -1.2
5,311,798 + Pf6N2E2_4581 0.15 -1.4
5,311,798 + Pf6N2E2_4581 0.15 +0.7
5,311,798 + Pf6N2E2_4581 0.15 +0.5
5,311,798 + Pf6N2E2_4581 0.15 +1.5
5,311,798 + Pf6N2E2_4581 0.15 +1.2
5,311,799 - Pf6N2E2_4581 0.15 -0.7
5,311,799 - Pf6N2E2_4581 0.15 -0.3
5,311,799 - Pf6N2E2_4581 0.15 +0.4
5,311,972 + Pf6N2E2_4581 0.28 -1.7
5,311,973 - Pf6N2E2_4581 0.28 +0.1
5,311,973 - Pf6N2E2_4581 0.28 -0.3
5,311,981 + Pf6N2E2_4581 0.28 -2.4
5,311,981 + Pf6N2E2_4581 0.28 -0.6
5,311,982 - Pf6N2E2_4581 0.28 +0.4
5,311,982 - Pf6N2E2_4581 0.28 +0.4
5,312,255 - Pf6N2E2_4581 0.49 -0.5
5,312,330 - Pf6N2E2_4581 0.54 -0.3
5,312,450 - Pf6N2E2_4581 0.63 +0.7
5,312,608 + Pf6N2E2_4581 0.75 -1.6
5,312,608 + Pf6N2E2_4581 0.75 +0.3
5,312,609 - Pf6N2E2_4581 0.75 +0.5
5,312,609 - Pf6N2E2_4581 0.75 +0.1
5,312,609 - Pf6N2E2_4581 0.75 +0.1
5,312,609 - Pf6N2E2_4581 0.75 -0.2
5,312,611 + Pf6N2E2_4581 0.75 +0.2
5,312,611 + Pf6N2E2_4581 0.75 -0.0
5,312,612 - Pf6N2E2_4581 0.75 -1.2
5,312,612 - Pf6N2E2_4581 0.75 -0.4
5,312,761 + Pf6N2E2_4581 0.86 -0.7
5,312,779 + Pf6N2E2_4581 0.87 -0.7
5,312,779 + Pf6N2E2_4581 0.87 -0.8
5,312,779 + Pf6N2E2_4581 0.87 +0.1
5,313,011 + +0.0
5,313,057 + -0.9
5,313,240 + +0.5
5,313,240 + +0.6
5,313,240 + -0.4
5,313,240 + -0.0
5,313,244 + +1.5
5,313,244 + -0.1

Or see this region's nucleotide sequence