Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_764 and Pf1N1B4_765 are separated by 116 nucleotides Pf1N1B4_765 and Pf1N1B4_766 are separated by 413 nucleotides
Pf1N1B4_764 - Uncharacterized isomerase yddE, PhzC-PhzF family, at 868,318 to 869,100
_764
Pf1N1B4_765 - Cys-tRNA(Pro) deacylase YbaK, at 869,217 to 869,687
_765
Pf1N1B4_766 - Glycerol uptake facilitator protein, at 870,101 to 870,910
_766
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 868.249 kb on - strand at 868.274 kb on + strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.330 kb on + strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.427 kb on + strand, within Pf1N1B4_764 at 868.428 kb on - strand, within Pf1N1B4_764 at 868.654 kb on + strand, within Pf1N1B4_764 at 868.655 kb on - strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.862 kb on + strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.914 kb on + strand, within Pf1N1B4_764 at 869.092 kb on + strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.183 kb on + strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.355 kb on - strand, within Pf1N1B4_765 at 869.355 kb on - strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand at 869.629 kb on + strand, within Pf1N1B4_765 at 869.629 kb on + strand, within Pf1N1B4_765 at 869.736 kb on - strand at 869.751 kb on - strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.771 kb on + strand at 869.772 kb on - strand at 869.855 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 870.073 kb on - strand at 870.332 kb on + strand, within Pf1N1B4_766 at 870.332 kb on + strand at 870.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 868,249 - +1.3 868,274 + +2.0 868,275 - -0.2 868,275 - -2.2 868,275 - +0.9 868,330 + -1.6 868,331 - -1.6 868,331 - -1.0 868,331 - +2.5 868,331 - +0.5 868,427 + Pf1N1B4_764 0.14 -0.2 868,428 - Pf1N1B4_764 0.14 -2.2 868,654 + Pf1N1B4_764 0.43 -1.9 868,655 - Pf1N1B4_764 0.43 -0.1 868,844 + Pf1N1B4_764 0.67 -1.2 868,844 + Pf1N1B4_764 0.67 -2.1 868,845 - Pf1N1B4_764 0.67 -0.2 868,845 - Pf1N1B4_764 0.67 -1.3 868,845 - Pf1N1B4_764 0.67 -0.8 868,845 - Pf1N1B4_764 0.67 +0.7 868,845 - Pf1N1B4_764 0.67 -0.6 868,845 - Pf1N1B4_764 0.67 -2.4 868,862 + Pf1N1B4_764 0.69 -0.4 868,863 - Pf1N1B4_764 0.70 -2.1 868,863 - Pf1N1B4_764 0.70 -1.0 868,863 - Pf1N1B4_764 0.70 +2.0 868,914 + Pf1N1B4_764 0.76 -0.7 869,092 + +0.1 869,093 - -2.4 869,093 - +0.8 869,093 - -0.8 869,183 + +0.4 869,184 - +0.3 869,184 - -1.3 869,184 - -0.5 869,184 - -1.8 869,184 - +0.7 869,184 - -0.0 869,355 - Pf1N1B4_765 0.29 -0.7 869,355 - Pf1N1B4_765 0.29 +0.0 869,602 + Pf1N1B4_765 0.82 -1.9 869,602 + Pf1N1B4_765 0.82 +1.4 869,602 + Pf1N1B4_765 0.82 -1.3 869,602 + +0.2 869,629 + Pf1N1B4_765 0.87 +2.2 869,629 + Pf1N1B4_765 0.87 -0.2 869,736 - +1.2 869,751 - -0.4 869,763 + +0.8 869,763 + +0.2 869,763 + -0.4 869,763 + -0.9 869,763 + -0.9 869,764 - -1.7 869,764 - +2.2 869,764 - -0.2 869,764 - -2.2 869,764 - -1.0 869,764 - +0.0 869,764 - -1.6 869,771 + -1.5 869,772 - +1.0 869,855 + -0.6 869,936 + -0.4 869,936 + -1.0 869,936 + -2.4 870,073 - +0.1 870,332 + Pf1N1B4_766 0.29 +0.4 870,332 + +3.0 870,333 - +0.8
Or see this region's nucleotide sequence