Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5983 and Pf1N1B4_5984 are separated by 37 nucleotides Pf1N1B4_5984 and Pf1N1B4_5985 are separated by 15 nucleotides
Pf1N1B4_5983 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 432,341 to 434,089
_5983
Pf1N1B4_5984 - FIG005548: transport protein, at 434,127 to 436,643
_5984
Pf1N1B4_5985 - FIG002465: BNR repeat protein, at 436,659 to 437,747
_5985
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.236 kb on + strand at 433.236 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.654 kb on - strand, within Pf1N1B4_5983 at 433.669 kb on - strand, within Pf1N1B4_5983 at 433.669 kb on - strand, within Pf1N1B4_5983 at 434.109 kb on + strand at 434.128 kb on + strand at 434.471 kb on - strand, within Pf1N1B4_5984 at 434.471 kb on - strand at 434.480 kb on - strand, within Pf1N1B4_5984 at 434.659 kb on + strand, within Pf1N1B4_5984 at 434.660 kb on - strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 435.076 kb on + strand, within Pf1N1B4_5984 at 435.077 kb on - strand, within Pf1N1B4_5984 at 435.154 kb on + strand, within Pf1N1B4_5984 at 435.154 kb on + strand, within Pf1N1B4_5984 at 435.154 kb on + strand, within Pf1N1B4_5984 at 435.155 kb on - strand, within Pf1N1B4_5984 at 435.155 kb on - strand at 435.409 kb on + strand, within Pf1N1B4_5984 at 435.409 kb on + strand, within Pf1N1B4_5984 at 435.409 kb on + strand, within Pf1N1B4_5984 at 435.815 kb on - strand, within Pf1N1B4_5984 at 436.108 kb on - strand, within Pf1N1B4_5984 at 436.155 kb on + strand, within Pf1N1B4_5984 at 436.177 kb on + strand, within Pf1N1B4_5984 at 436.177 kb on + strand, within Pf1N1B4_5984 at 436.429 kb on + strand at 436.495 kb on + strand at 436.495 kb on + strand at 436.525 kb on - strand at 436.525 kb on - strand at 436.546 kb on + strand at 436.676 kb on + strand at 436.836 kb on + strand, within Pf1N1B4_5985 at 437.008 kb on + strand, within Pf1N1B4_5985 at 437.009 kb on - strand, within Pf1N1B4_5985 at 437.084 kb on - strand, within Pf1N1B4_5985 at 437.084 kb on - strand, within Pf1N1B4_5985 at 437.215 kb on + strand, within Pf1N1B4_5985
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 433,236 + -0.6 433,236 + Pf1N1B4_5983 0.51 +1.0 433,653 + Pf1N1B4_5983 0.75 -0.8 433,653 + Pf1N1B4_5983 0.75 -0.6 433,653 + Pf1N1B4_5983 0.75 -1.1 433,654 - Pf1N1B4_5983 0.75 +0.4 433,669 - Pf1N1B4_5983 0.76 +2.1 433,669 - Pf1N1B4_5983 0.76 -2.1 434,109 + -1.0 434,128 + -1.4 434,471 - Pf1N1B4_5984 0.14 -2.6 434,471 - -0.7 434,480 - Pf1N1B4_5984 0.14 -1.7 434,659 + Pf1N1B4_5984 0.21 +2.6 434,660 - Pf1N1B4_5984 0.21 -0.1 434,965 + Pf1N1B4_5984 0.33 -2.9 434,965 + Pf1N1B4_5984 0.33 -1.7 434,965 + Pf1N1B4_5984 0.33 -2.4 434,966 - Pf1N1B4_5984 0.33 -0.7 434,966 - Pf1N1B4_5984 0.33 -2.1 434,966 - Pf1N1B4_5984 0.33 -1.3 434,966 - Pf1N1B4_5984 0.33 +2.4 435,076 + Pf1N1B4_5984 0.38 -1.5 435,077 - Pf1N1B4_5984 0.38 -1.3 435,154 + Pf1N1B4_5984 0.41 -0.4 435,154 + Pf1N1B4_5984 0.41 -0.7 435,154 + Pf1N1B4_5984 0.41 -0.3 435,155 - Pf1N1B4_5984 0.41 +0.0 435,155 - -0.9 435,409 + Pf1N1B4_5984 0.51 -0.9 435,409 + Pf1N1B4_5984 0.51 +0.6 435,409 + Pf1N1B4_5984 0.51 -1.0 435,815 - Pf1N1B4_5984 0.67 +0.5 436,108 - Pf1N1B4_5984 0.79 -1.4 436,155 + Pf1N1B4_5984 0.81 -1.3 436,177 + Pf1N1B4_5984 0.81 -0.7 436,177 + Pf1N1B4_5984 0.81 -0.7 436,429 + +0.0 436,495 + -2.0 436,495 + -0.6 436,525 - -0.7 436,525 - -0.7 436,546 + -1.0 436,676 + -2.0 436,836 + Pf1N1B4_5985 0.16 -0.4 437,008 + Pf1N1B4_5985 0.32 +1.3 437,009 - Pf1N1B4_5985 0.32 -1.2 437,084 - Pf1N1B4_5985 0.39 -0.1 437,084 - Pf1N1B4_5985 0.39 +0.5 437,215 + Pf1N1B4_5985 0.51 -1.5
Or see this region's nucleotide sequence