Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_538 and Pf1N1B4_539 are separated by 120 nucleotides Pf1N1B4_539 and Pf1N1B4_540 are separated by 201 nucleotides Pf1N1B4_540 and Pf1N1B4_541 are separated by 500 nucleotides Pf1N1B4_541 and Pf1N1B4_542 are separated by 106 nucleotides
Pf1N1B4_538 - hypothetical protein, at 636,352 to 637,221
_538
Pf1N1B4_539 - Transcriptional regulators, at 637,342 to 637,734
_539
Pf1N1B4_540 - FIG00960825: hypothetical protein, at 637,936 to 638,670
_540
Pf1N1B4_541 - hypothetical protein, at 639,171 to 639,431
_541
Pf1N1B4_542 - FIG00953856: hypothetical protein, at 639,538 to 639,813
_542
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.220 kb on - strand at 637.226 kb on + strand at 637.232 kb on + strand at 637.233 kb on - strand at 637.233 kb on - strand at 637.494 kb on - strand, within Pf1N1B4_539 at 637.539 kb on - strand, within Pf1N1B4_539 at 637.638 kb on - strand at 637.649 kb on + strand, within Pf1N1B4_539 at 637.649 kb on + strand, within Pf1N1B4_539 at 637.650 kb on - strand, within Pf1N1B4_539 at 637.723 kb on - strand at 637.723 kb on - strand at 637.723 kb on - strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.815 kb on + strand at 637.868 kb on - strand at 637.876 kb on + strand at 637.876 kb on + strand at 637.876 kb on + strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.886 kb on + strand at 638.158 kb on + strand, within Pf1N1B4_540 at 638.158 kb on + strand, within Pf1N1B4_540 at 638.158 kb on + strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540 at 638.368 kb on + strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.369 kb on - strand, within Pf1N1B4_540 at 638.418 kb on + strand, within Pf1N1B4_540 at 638.418 kb on + strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.419 kb on - strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.422 kb on + strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.423 kb on - strand, within Pf1N1B4_540 at 638.429 kb on - strand, within Pf1N1B4_540 at 638.429 kb on - strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.512 kb on + strand, within Pf1N1B4_540 at 638.513 kb on - strand at 638.513 kb on - strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.521 kb on + strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.522 kb on - strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.554 kb on + strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.555 kb on - strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand, within Pf1N1B4_540 at 638.560 kb on + strand at 638.560 kb on + strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.561 kb on - strand, within Pf1N1B4_540 at 638.587 kb on - strand at 638.669 kb on - strand at 638.669 kb on - strand at 638.748 kb on - strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.824 kb on + strand at 638.825 kb on - strand at 638.825 kb on - strand at 638.825 kb on - strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.857 kb on + strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.858 kb on - strand at 638.867 kb on - strand at 638.867 kb on - strand at 638.867 kb on - strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.915 kb on + strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.916 kb on - strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.917 kb on + strand at 638.918 kb on - strand at 638.986 kb on + strand at 638.986 kb on + strand at 638.987 kb on - strand at 639.022 kb on + strand at 639.022 kb on + strand at 639.023 kb on - strand at 639.088 kb on + strand at 639.088 kb on + strand at 639.089 kb on - strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.158 kb on + strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.159 kb on - strand at 639.164 kb on + strand at 639.164 kb on + strand at 639.165 kb on - strand at 639.165 kb on - strand at 639.165 kb on - strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.168 kb on + strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.169 kb on - strand at 639.394 kb on + strand, within Pf1N1B4_541 at 639.394 kb on + strand, within Pf1N1B4_541 at 639.394 kb on + strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.395 kb on - strand, within Pf1N1B4_541 at 639.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 637,219 + -0.2 637,219 + -0.1 637,219 + -2.6 637,219 + +0.7 637,219 + +0.7 637,220 - -3.4 637,226 + -2.6 637,232 + -2.0 637,233 - -0.9 637,233 - +0.4 637,494 - Pf1N1B4_539 0.39 -0.3 637,539 - Pf1N1B4_539 0.50 -1.0 637,638 - +2.2 637,649 + Pf1N1B4_539 0.78 -1.1 637,649 + Pf1N1B4_539 0.78 -2.1 637,650 - Pf1N1B4_539 0.78 -1.2 637,723 - +0.3 637,723 - -0.5 637,723 - +0.1 637,724 + +2.5 637,724 + -1.5 637,724 + +1.3 637,724 + -0.3 637,724 + -1.0 637,725 - -2.6 637,725 - -2.1 637,725 - -0.2 637,725 - +1.5 637,725 - -0.1 637,725 - -1.7 637,725 - -1.0 637,725 - -2.1 637,725 - -0.4 637,775 + -0.0 637,775 + +1.5 637,775 + -2.2 637,775 + +1.7 637,776 - -2.0 637,776 - -2.2 637,776 - +1.4 637,776 - -1.5 637,776 - -0.5 637,776 - -2.7 637,776 - +0.9 637,776 - +0.3 637,776 - -1.1 637,776 - -0.6 637,776 - +0.0 637,815 + -1.5 637,868 - +0.3 637,876 + +0.9 637,876 + +1.6 637,876 + -0.5 637,877 - -2.8 637,877 - -1.7 637,877 - -0.6 637,877 - +0.5 637,886 + -0.5 638,158 + Pf1N1B4_540 0.30 -1.4 638,158 + Pf1N1B4_540 0.30 -0.0 638,158 + Pf1N1B4_540 0.30 -1.3 638,159 - Pf1N1B4_540 0.30 +0.7 638,159 - +0.4 638,159 - Pf1N1B4_540 0.30 -1.1 638,159 - -0.1 638,159 - Pf1N1B4_540 0.30 -0.4 638,159 - Pf1N1B4_540 0.30 -1.3 638,159 - Pf1N1B4_540 0.30 -1.7 638,368 + Pf1N1B4_540 0.59 +0.6 638,369 - Pf1N1B4_540 0.59 +0.1 638,369 - +1.4 638,369 - Pf1N1B4_540 0.59 -0.9 638,369 - Pf1N1B4_540 0.59 -2.3 638,369 - Pf1N1B4_540 0.59 -0.9 638,369 - Pf1N1B4_540 0.59 -0.0 638,418 + Pf1N1B4_540 0.66 -1.1 638,418 + Pf1N1B4_540 0.66 -0.3 638,419 - Pf1N1B4_540 0.66 +0.1 638,419 - Pf1N1B4_540 0.66 +1.6 638,419 - Pf1N1B4_540 0.66 -0.4 638,419 - Pf1N1B4_540 0.66 -1.4 638,422 + Pf1N1B4_540 0.66 -1.5 638,422 + Pf1N1B4_540 0.66 -0.4 638,422 + Pf1N1B4_540 0.66 +1.5 638,422 + Pf1N1B4_540 0.66 -2.0 638,422 + Pf1N1B4_540 0.66 -1.9 638,422 + Pf1N1B4_540 0.66 -1.3 638,422 + Pf1N1B4_540 0.66 -0.1 638,422 + Pf1N1B4_540 0.66 -0.5 638,422 + Pf1N1B4_540 0.66 -0.5 638,422 + Pf1N1B4_540 0.66 -1.6 638,423 - Pf1N1B4_540 0.66 -1.1 638,423 - +0.1 638,423 - Pf1N1B4_540 0.66 -1.4 638,423 - Pf1N1B4_540 0.66 +0.1 638,423 - Pf1N1B4_540 0.66 -1.3 638,423 - Pf1N1B4_540 0.66 -1.8 638,423 - Pf1N1B4_540 0.66 -1.8 638,423 - Pf1N1B4_540 0.66 +0.6 638,423 - Pf1N1B4_540 0.66 -1.1 638,423 - Pf1N1B4_540 0.66 -0.6 638,423 - Pf1N1B4_540 0.66 -0.9 638,423 - Pf1N1B4_540 0.66 +1.2 638,429 - Pf1N1B4_540 0.67 -0.1 638,429 - Pf1N1B4_540 0.67 +1.3 638,512 + Pf1N1B4_540 0.78 -0.7 638,512 + Pf1N1B4_540 0.78 +0.4 638,512 + Pf1N1B4_540 0.78 -1.7 638,512 + Pf1N1B4_540 0.78 -1.5 638,512 + Pf1N1B4_540 0.78 -0.7 638,512 + Pf1N1B4_540 0.78 +0.4 638,512 + Pf1N1B4_540 0.78 -0.9 638,512 + Pf1N1B4_540 0.78 -1.7 638,513 - +0.7 638,513 - Pf1N1B4_540 0.79 +0.2 638,521 + Pf1N1B4_540 0.80 -1.9 638,521 + Pf1N1B4_540 0.80 -1.7 638,521 + Pf1N1B4_540 0.80 -1.0 638,521 + Pf1N1B4_540 0.80 +1.6 638,521 + Pf1N1B4_540 0.80 +0.9 638,521 + Pf1N1B4_540 0.80 -0.0 638,521 + Pf1N1B4_540 0.80 -0.1 638,521 + Pf1N1B4_540 0.80 -2.3 638,521 + Pf1N1B4_540 0.80 -0.6 638,521 + Pf1N1B4_540 0.80 +2.2 638,521 + Pf1N1B4_540 0.80 +0.5 638,521 + Pf1N1B4_540 0.80 -1.0 638,522 - Pf1N1B4_540 0.80 +0.8 638,522 - Pf1N1B4_540 0.80 -1.7 638,522 - Pf1N1B4_540 0.80 +0.9 638,522 - Pf1N1B4_540 0.80 +0.6 638,522 - Pf1N1B4_540 0.80 -1.2 638,522 - Pf1N1B4_540 0.80 +1.5 638,522 - Pf1N1B4_540 0.80 -2.5 638,522 - Pf1N1B4_540 0.80 +0.3 638,522 - Pf1N1B4_540 0.80 -1.3 638,522 - Pf1N1B4_540 0.80 -1.0 638,522 - Pf1N1B4_540 0.80 +1.4 638,554 + Pf1N1B4_540 0.84 -1.5 638,554 + Pf1N1B4_540 0.84 -2.7 638,554 + Pf1N1B4_540 0.84 -1.7 638,554 + Pf1N1B4_540 0.84 -0.9 638,554 + Pf1N1B4_540 0.84 -1.2 638,555 - Pf1N1B4_540 0.84 -1.6 638,555 - Pf1N1B4_540 0.84 -1.6 638,555 - Pf1N1B4_540 0.84 +0.4 638,555 - Pf1N1B4_540 0.84 +0.1 638,555 - Pf1N1B4_540 0.84 -0.0 638,560 + Pf1N1B4_540 0.85 +0.1 638,560 + Pf1N1B4_540 0.85 +3.2 638,560 + Pf1N1B4_540 0.85 -0.6 638,560 + +2.7 638,560 + Pf1N1B4_540 0.85 -1.8 638,561 - Pf1N1B4_540 0.85 +0.0 638,561 - Pf1N1B4_540 0.85 -1.0 638,561 - Pf1N1B4_540 0.85 -1.6 638,587 - +1.9 638,669 - -2.2 638,669 - -2.2 638,748 - -0.7 638,824 + +0.1 638,824 + -0.2 638,824 + -1.7 638,824 + -1.4 638,824 + +0.1 638,824 + +2.1 638,825 - +3.9 638,825 - +1.0 638,825 - +0.7 638,857 + -2.4 638,857 + -1.4 638,857 + -1.1 638,857 + +0.8 638,857 + -0.7 638,858 - -0.9 638,858 - +1.1 638,858 - -0.6 638,858 - -0.0 638,858 - +0.5 638,867 - -0.3 638,867 - -0.6 638,867 - -2.7 638,915 + -0.5 638,915 + -2.0 638,915 + -1.4 638,915 + +0.4 638,916 - -0.4 638,916 - -2.0 638,916 - -2.0 638,916 - +0.3 638,916 - +0.6 638,916 - -1.3 638,916 - +0.9 638,916 - +0.2 638,916 - -0.5 638,916 - -0.7 638,917 + +1.6 638,917 + +0.1 638,917 + -2.1 638,917 + +0.8 638,917 + -0.4 638,917 + +1.3 638,917 + -0.4 638,917 + -0.9 638,918 - -1.4 638,986 + +0.5 638,986 + -0.4 638,987 - +0.1 639,022 + -1.3 639,022 + -1.0 639,023 - -2.2 639,088 + -1.3 639,088 + -1.7 639,089 - -1.9 639,158 + -1.7 639,158 + -0.0 639,158 + +0.3 639,158 + +2.2 639,158 + -1.4 639,159 - -1.1 639,159 - -0.4 639,159 - -2.7 639,159 - -1.2 639,164 + -1.3 639,164 + +0.3 639,165 - -0.2 639,165 - -1.4 639,165 - -1.8 639,168 + -1.5 639,168 + -0.6 639,168 + -0.4 639,168 + +1.7 639,168 + -1.7 639,168 + -2.4 639,168 + -0.4 639,168 + -0.7 639,168 + +0.4 639,168 + +0.4 639,168 + +1.6 639,168 + -2.3 639,168 + -1.0 639,168 + +0.2 639,168 + +0.3 639,168 + -2.5 639,168 + -0.7 639,168 + -0.3 639,168 + +0.3 639,168 + -0.1 639,169 - +1.2 639,169 - +1.8 639,169 - -0.9 639,169 - +0.7 639,169 - -1.6 639,169 - -1.6 639,169 - +0.2 639,169 - -0.1 639,169 - -0.6 639,169 - -0.1 639,169 - +0.1 639,169 - -1.4 639,169 - -0.2 639,394 + Pf1N1B4_541 0.85 -2.4 639,394 + Pf1N1B4_541 0.85 +0.4 639,394 + Pf1N1B4_541 0.85 -1.1 639,395 - Pf1N1B4_541 0.86 -0.5 639,395 - Pf1N1B4_541 0.86 +1.0 639,395 - Pf1N1B4_541 0.86 -1.4 639,395 - Pf1N1B4_541 0.86 -1.3 639,537 + -0.6
Or see this region's nucleotide sequence