Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5269 and Pf1N1B4_5270 are separated by 604 nucleotides Pf1N1B4_5270 and Pf1N1B4_5271 are separated by 390 nucleotides Pf1N1B4_5271 and Pf1N1B4_5272 are separated by 255 nucleotides
Pf1N1B4_5269 - hypothetical protein, at 26,471 to 26,764
_5269
Pf1N1B4_5270 - hypothetical protein, at 27,369 to 28,193
_5270
Pf1N1B4_5271 - hypothetical protein, at 28,584 to 28,769
_5271
Pf1N1B4_5272 - hypothetical protein, at 29,025 to 29,201
_5272
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 26.382 kb on - strand at 26.385 kb on + strand at 26.386 kb on - strand at 26.521 kb on + strand, within Pf1N1B4_5269 at 26.521 kb on + strand, within Pf1N1B4_5269 at 26.521 kb on + strand, within Pf1N1B4_5269 at 26.522 kb on - strand, within Pf1N1B4_5269 at 26.660 kb on + strand, within Pf1N1B4_5269 at 26.660 kb on + strand, within Pf1N1B4_5269 at 26.660 kb on + strand, within Pf1N1B4_5269 at 26.661 kb on - strand, within Pf1N1B4_5269 at 26.837 kb on - strand at 26.980 kb on - strand at 26.980 kb on - strand at 26.980 kb on - strand at 27.045 kb on + strand at 27.046 kb on - strand at 27.046 kb on - strand at 27.046 kb on - strand at 27.046 kb on - strand at 27.046 kb on - strand at 27.145 kb on + strand at 27.146 kb on - strand at 27.181 kb on + strand at 27.182 kb on - strand at 27.190 kb on - strand at 27.190 kb on - strand at 27.190 kb on - strand at 27.238 kb on - strand at 27.269 kb on + strand at 27.294 kb on - strand at 27.332 kb on - strand at 27.365 kb on + strand at 27.366 kb on - strand at 27.433 kb on - strand at 27.493 kb on + strand, within Pf1N1B4_5270 at 27.500 kb on + strand at 27.594 kb on + strand, within Pf1N1B4_5270 at 27.595 kb on - strand at 27.613 kb on - strand, within Pf1N1B4_5270 at 27.637 kb on - strand, within Pf1N1B4_5270 at 27.672 kb on + strand, within Pf1N1B4_5270 at 27.693 kb on + strand at 27.694 kb on - strand, within Pf1N1B4_5270 at 27.694 kb on - strand, within Pf1N1B4_5270 at 27.746 kb on + strand, within Pf1N1B4_5270 at 27.746 kb on + strand, within Pf1N1B4_5270 at 27.747 kb on - strand, within Pf1N1B4_5270 at 27.759 kb on - strand, within Pf1N1B4_5270 at 27.759 kb on - strand, within Pf1N1B4_5270 at 27.831 kb on + strand, within Pf1N1B4_5270 at 27.832 kb on - strand, within Pf1N1B4_5270 at 27.858 kb on + strand, within Pf1N1B4_5270 at 27.858 kb on + strand, within Pf1N1B4_5270 at 27.858 kb on + strand, within Pf1N1B4_5270 at 27.859 kb on - strand, within Pf1N1B4_5270 at 27.859 kb on - strand, within Pf1N1B4_5270 at 27.859 kb on - strand, within Pf1N1B4_5270 at 27.859 kb on - strand, within Pf1N1B4_5270 at 27.859 kb on - strand, within Pf1N1B4_5270 at 27.875 kb on + strand, within Pf1N1B4_5270 at 27.909 kb on + strand, within Pf1N1B4_5270 at 27.909 kb on + strand, within Pf1N1B4_5270 at 27.910 kb on - strand, within Pf1N1B4_5270 at 27.910 kb on - strand, within Pf1N1B4_5270 at 27.953 kb on + strand, within Pf1N1B4_5270 at 27.953 kb on + strand, within Pf1N1B4_5270 at 27.953 kb on + strand, within Pf1N1B4_5270 at 27.954 kb on - strand, within Pf1N1B4_5270 at 27.954 kb on - strand, within Pf1N1B4_5270 at 27.954 kb on - strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.043 kb on + strand, within Pf1N1B4_5270 at 28.044 kb on - strand, within Pf1N1B4_5270 at 28.044 kb on - strand, within Pf1N1B4_5270 at 28.044 kb on - strand, within Pf1N1B4_5270 at 28.045 kb on + strand, within Pf1N1B4_5270 at 28.045 kb on + strand, within Pf1N1B4_5270 at 28.046 kb on - strand, within Pf1N1B4_5270 at 28.112 kb on + strand at 28.113 kb on - strand at 28.140 kb on + strand at 28.140 kb on + strand at 28.224 kb on + strand at 28.224 kb on + strand at 28.224 kb on + strand at 28.225 kb on - strand at 28.287 kb on + strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.288 kb on - strand at 28.350 kb on + strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.351 kb on - strand at 28.355 kb on + strand at 28.355 kb on + strand at 28.367 kb on + strand at 28.367 kb on + strand at 28.368 kb on - strand at 28.368 kb on - strand at 28.368 kb on - strand at 28.440 kb on + strand at 28.440 kb on + strand at 28.441 kb on - strand at 28.441 kb on - strand at 28.441 kb on - strand at 28.441 kb on - strand at 28.441 kb on - strand at 28.441 kb on - strand at 28.485 kb on + strand at 28.485 kb on + strand at 28.486 kb on - strand at 28.502 kb on - strand at 28.502 kb on - strand at 28.509 kb on + strand at 28.510 kb on - strand at 28.586 kb on - strand at 28.586 kb on - strand at 28.732 kb on - strand, within Pf1N1B4_5271 at 28.836 kb on + strand at 28.837 kb on - strand at 28.945 kb on - strand at 28.948 kb on - strand at 28.948 kb on - strand at 28.971 kb on - strand at 28.971 kb on - strand at 28.971 kb on - strand at 28.989 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 26,382 - -2.0 26,385 + -1.5 26,386 - +0.5 26,521 + Pf1N1B4_5269 0.17 -0.8 26,521 + Pf1N1B4_5269 0.17 +1.7 26,521 + Pf1N1B4_5269 0.17 -1.1 26,522 - Pf1N1B4_5269 0.17 -2.0 26,660 + Pf1N1B4_5269 0.64 -1.6 26,660 + Pf1N1B4_5269 0.64 -1.6 26,660 + Pf1N1B4_5269 0.64 -1.7 26,661 - Pf1N1B4_5269 0.65 -2.0 26,837 - +1.9 26,980 - -0.4 26,980 - -0.0 26,980 - -1.2 27,045 + -0.4 27,046 - -0.7 27,046 - +0.1 27,046 - -1.0 27,046 - +2.2 27,046 - +2.5 27,145 + -0.5 27,146 - +0.4 27,181 + -0.5 27,182 - -0.4 27,190 - -0.4 27,190 - +1.5 27,190 - -0.5 27,238 - -0.5 27,269 + +0.5 27,294 - -1.0 27,332 - +3.8 27,365 + -0.4 27,366 - -0.8 27,433 - +0.2 27,493 + Pf1N1B4_5270 0.15 +1.2 27,500 + +3.5 27,594 + Pf1N1B4_5270 0.27 +0.1 27,595 - +1.8 27,613 - Pf1N1B4_5270 0.30 +0.8 27,637 - Pf1N1B4_5270 0.32 -1.2 27,672 + Pf1N1B4_5270 0.37 +0.5 27,693 + +0.2 27,694 - Pf1N1B4_5270 0.39 +2.7 27,694 - Pf1N1B4_5270 0.39 -1.0 27,746 + Pf1N1B4_5270 0.46 -1.2 27,746 + Pf1N1B4_5270 0.46 +0.3 27,747 - Pf1N1B4_5270 0.46 +0.2 27,759 - Pf1N1B4_5270 0.47 -0.2 27,759 - Pf1N1B4_5270 0.47 -0.9 27,831 + Pf1N1B4_5270 0.56 +0.2 27,832 - Pf1N1B4_5270 0.56 -0.8 27,858 + Pf1N1B4_5270 0.59 -0.4 27,858 + Pf1N1B4_5270 0.59 +1.6 27,858 + Pf1N1B4_5270 0.59 -2.2 27,859 - Pf1N1B4_5270 0.59 +0.2 27,859 - Pf1N1B4_5270 0.59 -0.5 27,859 - Pf1N1B4_5270 0.59 +2.0 27,859 - Pf1N1B4_5270 0.59 -0.4 27,859 - Pf1N1B4_5270 0.59 +0.8 27,875 + Pf1N1B4_5270 0.61 -2.4 27,909 + Pf1N1B4_5270 0.65 -0.4 27,909 + Pf1N1B4_5270 0.65 -0.0 27,910 - Pf1N1B4_5270 0.66 -1.3 27,910 - Pf1N1B4_5270 0.66 -0.5 27,953 + Pf1N1B4_5270 0.71 -1.2 27,953 + Pf1N1B4_5270 0.71 -1.4 27,953 + Pf1N1B4_5270 0.71 -1.1 27,954 - Pf1N1B4_5270 0.71 +1.4 27,954 - Pf1N1B4_5270 0.71 +0.5 27,954 - Pf1N1B4_5270 0.71 +1.9 28,043 + Pf1N1B4_5270 0.82 -0.0 28,043 + Pf1N1B4_5270 0.82 -0.9 28,043 + Pf1N1B4_5270 0.82 -2.3 28,043 + Pf1N1B4_5270 0.82 +2.3 28,043 + Pf1N1B4_5270 0.82 -1.1 28,043 + Pf1N1B4_5270 0.82 -0.3 28,043 + Pf1N1B4_5270 0.82 -1.2 28,043 + Pf1N1B4_5270 0.82 -2.8 28,044 - Pf1N1B4_5270 0.82 +1.4 28,044 - Pf1N1B4_5270 0.82 -0.7 28,044 - Pf1N1B4_5270 0.82 +0.0 28,045 + Pf1N1B4_5270 0.82 -1.0 28,045 + Pf1N1B4_5270 0.82 -2.9 28,046 - Pf1N1B4_5270 0.82 -0.2 28,112 + -2.0 28,113 - +1.6 28,140 + -1.6 28,140 + +0.2 28,224 + -0.4 28,224 + +2.3 28,224 + -1.9 28,225 - +0.8 28,287 + +2.0 28,288 - -1.8 28,288 - +0.2 28,288 - -0.9 28,288 - -1.7 28,288 - +0.9 28,288 - -0.0 28,288 - -1.0 28,288 - +0.8 28,288 - -0.4 28,350 + -1.0 28,351 - -0.5 28,351 - -1.8 28,351 - -1.5 28,351 - +0.0 28,351 - +0.2 28,351 - -2.1 28,351 - +2.3 28,355 + +2.2 28,355 + -0.4 28,367 + +2.4 28,367 + -0.7 28,368 - -2.2 28,368 - -0.5 28,368 - +0.6 28,440 + -1.5 28,440 + -1.0 28,441 - +0.2 28,441 - -0.2 28,441 - +0.7 28,441 - -2.1 28,441 - -0.3 28,441 - -1.2 28,485 + +1.4 28,485 + -3.0 28,486 - -1.4 28,502 - -0.8 28,502 - -0.7 28,509 + +1.6 28,510 - -0.4 28,586 - -1.2 28,586 - -0.8 28,732 - Pf1N1B4_5271 0.80 -1.7 28,836 + -1.2 28,837 - +2.7 28,945 - +3.1 28,948 - +2.1 28,948 - -0.7 28,971 - -0.2 28,971 - -1.1 28,971 - +0.5 28,989 + +2.0
Or see this region's nucleotide sequence