Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5139

Experiment: LB 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5138 and Pf1N1B4_5139 are separated by 113 nucleotidesPf1N1B4_5139 and Pf1N1B4_5140 are separated by 348 nucleotides Pf1N1B4_5138 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,717,408 to 5,718,499 _5138 Pf1N1B4_5139 - Gamma-aminobutyrate permease, at 5,718,613 to 5,720,118 _5139 Pf1N1B4_5140 - Gifsy-2 prophage protein, at 5,720,467 to 5,721,156 _5140 Position (kb) 5718 5719 5720 5721Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5717.633 kb on + strand, within Pf1N1B4_5138at 5717.694 kb on + strand, within Pf1N1B4_5138at 5717.721 kb on + strand, within Pf1N1B4_5138at 5717.721 kb on + strand, within Pf1N1B4_5138at 5717.767 kb on - strandat 5717.911 kb on - strand, within Pf1N1B4_5138at 5718.492 kb on + strandat 5718.492 kb on + strandat 5718.492 kb on + strandat 5718.598 kb on - strandat 5718.607 kb on + strandat 5718.607 kb on + strandat 5718.608 kb on - strandat 5718.790 kb on - strand, within Pf1N1B4_5139at 5718.790 kb on - strand, within Pf1N1B4_5139at 5718.950 kb on + strand, within Pf1N1B4_5139at 5719.089 kb on + strand, within Pf1N1B4_5139at 5719.091 kb on + strand, within Pf1N1B4_5139at 5719.091 kb on + strandat 5719.092 kb on - strand, within Pf1N1B4_5139at 5719.141 kb on + strand, within Pf1N1B4_5139at 5719.148 kb on - strand, within Pf1N1B4_5139at 5719.568 kb on + strand, within Pf1N1B4_5139at 5719.591 kb on - strand, within Pf1N1B4_5139at 5719.663 kb on + strand, within Pf1N1B4_5139at 5719.663 kb on + strandat 5719.663 kb on + strand, within Pf1N1B4_5139at 5719.664 kb on - strand, within Pf1N1B4_5139at 5719.664 kb on - strand, within Pf1N1B4_5139at 5719.664 kb on - strand, within Pf1N1B4_5139at 5719.664 kb on - strand, within Pf1N1B4_5139at 5719.664 kb on - strand, within Pf1N1B4_5139at 5719.770 kb on - strandat 5720.228 kb on + strandat 5720.229 kb on - strandat 5720.289 kb on + strandat 5720.545 kb on + strand, within Pf1N1B4_5140at 5720.546 kb on - strandat 5720.564 kb on + strand, within Pf1N1B4_5140at 5720.572 kb on + strand, within Pf1N1B4_5140at 5720.572 kb on + strandat 5720.572 kb on + strand, within Pf1N1B4_5140at 5720.572 kb on + strand, within Pf1N1B4_5140at 5720.573 kb on - strand, within Pf1N1B4_5140at 5720.573 kb on - strandat 5720.719 kb on - strand, within Pf1N1B4_5140at 5720.815 kb on + strand, within Pf1N1B4_5140at 5720.815 kb on + strand, within Pf1N1B4_5140at 5720.816 kb on - strandat 5720.816 kb on - strandat 5720.816 kb on - strand, within Pf1N1B4_5140at 5720.945 kb on + strand, within Pf1N1B4_5140at 5720.945 kb on + strand, within Pf1N1B4_5140at 5720.946 kb on - strand, within Pf1N1B4_5140at 5720.946 kb on - strand, within Pf1N1B4_5140at 5720.950 kb on - strand, within Pf1N1B4_5140at 5720.951 kb on + strand, within Pf1N1B4_5140at 5720.952 kb on - strandat 5720.952 kb on - strand, within Pf1N1B4_5140at 5720.952 kb on - strandat 5720.952 kb on - strand, within Pf1N1B4_5140at 5721.012 kb on + strand, within Pf1N1B4_5140at 5721.038 kb on + strand, within Pf1N1B4_5140at 5721.038 kb on + strand, within Pf1N1B4_5140at 5721.039 kb on - strand, within Pf1N1B4_5140at 5721.039 kb on - strand, within Pf1N1B4_5140at 5721.039 kb on - strand, within Pf1N1B4_5140at 5721.039 kb on - strand, within Pf1N1B4_5140at 5721.045 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
remove
5,717,633 + Pf1N1B4_5138 0.21 +1.6
5,717,694 + Pf1N1B4_5138 0.26 -0.4
5,717,721 + Pf1N1B4_5138 0.29 +0.8
5,717,721 + Pf1N1B4_5138 0.29 -1.4
5,717,767 - -0.3
5,717,911 - Pf1N1B4_5138 0.46 -1.7
5,718,492 + -0.5
5,718,492 + -0.6
5,718,492 + -0.3
5,718,598 - +1.7
5,718,607 + +0.9
5,718,607 + +0.6
5,718,608 - +1.5
5,718,790 - Pf1N1B4_5139 0.12 -2.1
5,718,790 - Pf1N1B4_5139 0.12 -0.5
5,718,950 + Pf1N1B4_5139 0.22 +0.0
5,719,089 + Pf1N1B4_5139 0.32 -1.5
5,719,091 + Pf1N1B4_5139 0.32 +0.1
5,719,091 + -0.5
5,719,092 - Pf1N1B4_5139 0.32 -1.9
5,719,141 + Pf1N1B4_5139 0.35 -0.7
5,719,148 - Pf1N1B4_5139 0.36 -1.3
5,719,568 + Pf1N1B4_5139 0.63 +1.0
5,719,591 - Pf1N1B4_5139 0.65 -2.7
5,719,663 + Pf1N1B4_5139 0.70 -1.4
5,719,663 + +1.1
5,719,663 + Pf1N1B4_5139 0.70 -1.4
5,719,664 - Pf1N1B4_5139 0.70 -1.2
5,719,664 - Pf1N1B4_5139 0.70 +1.0
5,719,664 - Pf1N1B4_5139 0.70 -1.0
5,719,664 - Pf1N1B4_5139 0.70 -2.1
5,719,664 - Pf1N1B4_5139 0.70 -1.6
5,719,770 - +1.5
5,720,228 + -1.7
5,720,229 - +0.3
5,720,289 + +1.1
5,720,545 + Pf1N1B4_5140 0.11 +0.0
5,720,546 - +1.3
5,720,564 + Pf1N1B4_5140 0.14 -1.3
5,720,572 + Pf1N1B4_5140 0.15 -1.2
5,720,572 + +0.5
5,720,572 + Pf1N1B4_5140 0.15 -0.1
5,720,572 + Pf1N1B4_5140 0.15 -0.5
5,720,573 - Pf1N1B4_5140 0.15 -1.3
5,720,573 - +0.0
5,720,719 - Pf1N1B4_5140 0.37 -0.1
5,720,815 + Pf1N1B4_5140 0.50 -0.7
5,720,815 + Pf1N1B4_5140 0.50 -0.0
5,720,816 - +0.8
5,720,816 - -0.2
5,720,816 - Pf1N1B4_5140 0.51 -0.3
5,720,945 + Pf1N1B4_5140 0.69 -0.5
5,720,945 + Pf1N1B4_5140 0.69 -0.5
5,720,946 - Pf1N1B4_5140 0.69 -1.4
5,720,946 - Pf1N1B4_5140 0.69 +1.0
5,720,950 - Pf1N1B4_5140 0.70 -1.5
5,720,951 + Pf1N1B4_5140 0.70 +1.5
5,720,952 - +0.0
5,720,952 - Pf1N1B4_5140 0.70 -1.1
5,720,952 - -0.6
5,720,952 - Pf1N1B4_5140 0.70 +1.4
5,721,012 + Pf1N1B4_5140 0.79 -3.8
5,721,038 + Pf1N1B4_5140 0.83 +1.1
5,721,038 + Pf1N1B4_5140 0.83 +2.0
5,721,039 - Pf1N1B4_5140 0.83 +0.1
5,721,039 - Pf1N1B4_5140 0.83 +0.4
5,721,039 - Pf1N1B4_5140 0.83 +0.0
5,721,039 - Pf1N1B4_5140 0.83 +0.9
5,721,045 - -0.2

Or see this region's nucleotide sequence