Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_45 and Pf1N1B4_46 are separated by 55 nucleotides Pf1N1B4_46 and Pf1N1B4_47 are separated by 3 nucleotides Pf1N1B4_47 and Pf1N1B4_48 are separated by 145 nucleotides Pf1N1B4_48 and Pf1N1B4_49 are separated by 30 nucleotides Pf1N1B4_49 and Pf1N1B4_50 are separated by 163 nucleotides
Pf1N1B4_45 - Copper resistance protein B, at 53,588 to 54,478
_45
Pf1N1B4_46 - Copper resistance protein C precursor, at 54,534 to 54,917
_46
Pf1N1B4_47 - Copper resistance protein D, at 54,921 to 55,850
_47
Pf1N1B4_48 - hypothetical protein, at 55,996 to 56,406
_48
Pf1N1B4_49 - hypothetical protein, at 56,437 to 56,643
_49
Pf1N1B4_50 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 56,807 to 56,989
_50
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.137 kb on + strand, within Pf1N1B4_45 at 54.138 kb on - strand, within Pf1N1B4_45 at 54.210 kb on - strand, within Pf1N1B4_45 at 54.365 kb on + strand at 54.365 kb on + strand, within Pf1N1B4_45 at 54.365 kb on + strand, within Pf1N1B4_45 at 54.365 kb on + strand, within Pf1N1B4_45 at 54.365 kb on + strand, within Pf1N1B4_45 at 54.365 kb on + strand, within Pf1N1B4_45 at 54.365 kb on + strand, within Pf1N1B4_45 at 54.366 kb on - strand, within Pf1N1B4_45 at 54.366 kb on - strand, within Pf1N1B4_45 at 54.366 kb on - strand, within Pf1N1B4_45 at 54.393 kb on - strand at 54.410 kb on + strand at 54.411 kb on - strand at 54.485 kb on + strand at 54.486 kb on - strand at 54.514 kb on - strand at 54.843 kb on + strand, within Pf1N1B4_46 at 54.843 kb on + strand, within Pf1N1B4_46 at 54.844 kb on - strand, within Pf1N1B4_46 at 54.844 kb on - strand, within Pf1N1B4_46 at 54.844 kb on - strand, within Pf1N1B4_46 at 54.844 kb on - strand, within Pf1N1B4_46 at 54.899 kb on + strand at 54.899 kb on + strand at 54.899 kb on + strand at 54.899 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.960 kb on + strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 54.961 kb on - strand at 55.006 kb on - strand at 55.006 kb on - strand at 55.014 kb on - strand, within Pf1N1B4_47 at 55.276 kb on + strand, within Pf1N1B4_47 at 55.277 kb on - strand, within Pf1N1B4_47 at 55.341 kb on - strand, within Pf1N1B4_47 at 55.499 kb on + strand, within Pf1N1B4_47 at 55.611 kb on + strand, within Pf1N1B4_47 at 55.611 kb on + strand, within Pf1N1B4_47 at 55.611 kb on + strand, within Pf1N1B4_47 at 55.611 kb on + strand, within Pf1N1B4_47 at 55.612 kb on - strand, within Pf1N1B4_47 at 55.848 kb on + strand at 55.848 kb on + strand at 55.863 kb on + strand at 55.863 kb on + strand at 55.864 kb on - strand at 55.870 kb on + strand at 55.980 kb on + strand at 55.980 kb on + strand at 55.981 kb on - strand at 56.005 kb on + strand at 56.006 kb on - strand at 56.516 kb on + strand, within Pf1N1B4_49 at 56.517 kb on - strand, within Pf1N1B4_49 at 56.520 kb on - strand, within Pf1N1B4_49 at 56.559 kb on + strand, within Pf1N1B4_49 at 56.559 kb on + strand, within Pf1N1B4_49 at 56.560 kb on - strand, within Pf1N1B4_49 at 56.560 kb on - strand at 56.560 kb on - strand, within Pf1N1B4_49 at 56.588 kb on + strand, within Pf1N1B4_49 at 56.588 kb on + strand, within Pf1N1B4_49 at 56.767 kb on + strand at 56.784 kb on + strand at 56.837 kb on + strand, within Pf1N1B4_50 at 56.837 kb on + strand, within Pf1N1B4_50 at 56.837 kb on + strand, within Pf1N1B4_50 at 56.837 kb on + strand, within Pf1N1B4_50 at 56.838 kb on - strand, within Pf1N1B4_50 at 56.838 kb on - strand, within Pf1N1B4_50 at 56.838 kb on - strand, within Pf1N1B4_50 at 56.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 54,137 + Pf1N1B4_45 0.62 -1.7 54,138 - Pf1N1B4_45 0.62 -0.9 54,210 - Pf1N1B4_45 0.70 -1.3 54,365 + -1.4 54,365 + Pf1N1B4_45 0.87 -1.8 54,365 + Pf1N1B4_45 0.87 -1.3 54,365 + Pf1N1B4_45 0.87 -2.5 54,365 + Pf1N1B4_45 0.87 -1.4 54,365 + Pf1N1B4_45 0.87 -0.3 54,365 + Pf1N1B4_45 0.87 +0.8 54,366 - Pf1N1B4_45 0.87 -1.1 54,366 - Pf1N1B4_45 0.87 -2.2 54,366 - Pf1N1B4_45 0.87 -0.5 54,393 - -1.9 54,410 + -0.0 54,411 - -0.9 54,485 + +2.0 54,486 - +1.6 54,514 - +1.3 54,843 + Pf1N1B4_46 0.80 -1.7 54,843 + Pf1N1B4_46 0.80 -1.0 54,844 - Pf1N1B4_46 0.81 -0.2 54,844 - Pf1N1B4_46 0.81 -1.3 54,844 - Pf1N1B4_46 0.81 +1.3 54,844 - Pf1N1B4_46 0.81 -1.8 54,899 + -0.6 54,899 + -1.7 54,899 + +0.8 54,899 + +0.1 54,960 + +0.4 54,960 + -0.2 54,960 + +0.2 54,960 + +0.6 54,960 + -0.9 54,960 + -0.6 54,960 + -2.1 54,961 - +1.6 54,961 - +0.2 54,961 - -2.6 54,961 - -2.0 54,961 - +1.1 55,006 - +1.3 55,006 - +1.2 55,014 - Pf1N1B4_47 0.10 -1.3 55,276 + Pf1N1B4_47 0.38 -1.6 55,277 - Pf1N1B4_47 0.38 -0.9 55,341 - Pf1N1B4_47 0.45 +0.1 55,499 + Pf1N1B4_47 0.62 -0.2 55,611 + Pf1N1B4_47 0.74 -0.0 55,611 + Pf1N1B4_47 0.74 +1.9 55,611 + Pf1N1B4_47 0.74 -0.7 55,611 + Pf1N1B4_47 0.74 -2.5 55,612 - Pf1N1B4_47 0.74 +1.4 55,848 + -1.3 55,848 + -0.3 55,863 + +0.7 55,863 + -1.3 55,864 - -0.4 55,870 + -1.3 55,980 + -0.1 55,980 + -1.3 55,981 - +0.4 56,005 + +1.2 56,006 - +0.8 56,516 + Pf1N1B4_49 0.38 -0.9 56,517 - Pf1N1B4_49 0.39 +1.5 56,520 - Pf1N1B4_49 0.40 -0.6 56,559 + Pf1N1B4_49 0.59 +0.9 56,559 + Pf1N1B4_49 0.59 -2.4 56,560 - Pf1N1B4_49 0.59 -1.3 56,560 - +0.2 56,560 - Pf1N1B4_49 0.59 +1.2 56,588 + Pf1N1B4_49 0.73 +0.6 56,588 + Pf1N1B4_49 0.73 -0.4 56,767 + +1.3 56,784 + -1.4 56,837 + Pf1N1B4_50 0.16 -1.3 56,837 + Pf1N1B4_50 0.16 -0.9 56,837 + Pf1N1B4_50 0.16 -1.6 56,837 + Pf1N1B4_50 0.16 -0.7 56,838 - Pf1N1B4_50 0.17 -2.3 56,838 - Pf1N1B4_50 0.17 -1.2 56,838 - Pf1N1B4_50 0.17 +1.6 56,838 - +1.6
Or see this region's nucleotide sequence