Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4555 and Pf1N1B4_4556 are separated by 53 nucleotides Pf1N1B4_4556 and Pf1N1B4_4557 are separated by 2 nucleotides Pf1N1B4_4557 and Pf1N1B4_4558 are separated by 82 nucleotides Pf1N1B4_4558 and Pf1N1B4_4559 are separated by 26 nucleotides
Pf1N1B4_4555 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 5,025,483 to 5,025,602
_4555
Pf1N1B4_4556 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 5,025,656 to 5,026,363
_4556
Pf1N1B4_4557 - FIG00955691: hypothetical protein, at 5,026,366 to 5,027,649
_4557
Pf1N1B4_4558 - Outer membrane lipoprotein-sorting protein, at 5,027,732 to 5,028,568
_4558
Pf1N1B4_4559 - Predicted exporter of the RND superfamily, at 5,028,595 to 5,031,210
_4559
Position (kb)
5026
5027
5028 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5025.531 kb on + strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.532 kb on - strand, within Pf1N1B4_4555 at 5025.644 kb on - strand at 5025.770 kb on + strand at 5025.772 kb on + strand at 5025.839 kb on + strand at 5025.944 kb on + strand, within Pf1N1B4_4556 at 5025.945 kb on - strand, within Pf1N1B4_4556 at 5025.945 kb on - strand, within Pf1N1B4_4556 at 5025.997 kb on + strand, within Pf1N1B4_4556 at 5025.997 kb on + strand, within Pf1N1B4_4556 at 5025.998 kb on - strand, within Pf1N1B4_4556 at 5025.998 kb on - strand, within Pf1N1B4_4556 at 5026.361 kb on + strand at 5026.361 kb on + strand at 5026.528 kb on + strand, within Pf1N1B4_4557 at 5026.570 kb on + strand, within Pf1N1B4_4557 at 5026.679 kb on - strand, within Pf1N1B4_4557 at 5026.679 kb on - strand, within Pf1N1B4_4557 at 5026.690 kb on + strand, within Pf1N1B4_4557 at 5026.690 kb on + strand, within Pf1N1B4_4557 at 5026.691 kb on - strand, within Pf1N1B4_4557 at 5026.754 kb on + strand, within Pf1N1B4_4557 at 5026.837 kb on - strand at 5027.021 kb on - strand at 5027.102 kb on - strand, within Pf1N1B4_4557 at 5027.318 kb on - strand, within Pf1N1B4_4557 at 5027.412 kb on - strand, within Pf1N1B4_4557 at 5027.603 kb on - strand at 5027.653 kb on + strand at 5027.653 kb on + strand at 5028.059 kb on + strand, within Pf1N1B4_4558 at 5028.059 kb on + strand, within Pf1N1B4_4558 at 5028.138 kb on - strand at 5028.218 kb on + strand, within Pf1N1B4_4558 at 5028.218 kb on + strand, within Pf1N1B4_4558 at 5028.218 kb on + strand, within Pf1N1B4_4558 at 5028.219 kb on - strand, within Pf1N1B4_4558 at 5028.219 kb on - strand, within Pf1N1B4_4558
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 5,025,531 + Pf1N1B4_4555 0.40 +1.1 5,025,532 - Pf1N1B4_4555 0.41 -0.1 5,025,532 - Pf1N1B4_4555 0.41 +0.4 5,025,532 - Pf1N1B4_4555 0.41 +1.6 5,025,532 - Pf1N1B4_4555 0.41 -2.3 5,025,644 - -0.9 5,025,770 + -0.8 5,025,772 + +1.8 5,025,839 + -0.5 5,025,944 + Pf1N1B4_4556 0.41 +1.9 5,025,945 - Pf1N1B4_4556 0.41 -0.1 5,025,945 - Pf1N1B4_4556 0.41 -0.7 5,025,997 + Pf1N1B4_4556 0.48 -0.8 5,025,997 + Pf1N1B4_4556 0.48 +1.8 5,025,998 - Pf1N1B4_4556 0.48 -0.0 5,025,998 - Pf1N1B4_4556 0.48 +0.2 5,026,361 + -0.7 5,026,361 + -0.0 5,026,528 + Pf1N1B4_4557 0.13 -1.2 5,026,570 + Pf1N1B4_4557 0.16 -1.7 5,026,679 - Pf1N1B4_4557 0.24 +1.5 5,026,679 - Pf1N1B4_4557 0.24 -2.0 5,026,690 + Pf1N1B4_4557 0.25 +0.3 5,026,690 + Pf1N1B4_4557 0.25 -0.5 5,026,691 - Pf1N1B4_4557 0.25 -1.7 5,026,754 + Pf1N1B4_4557 0.30 -0.7 5,026,837 - -0.4 5,027,021 - +2.8 5,027,102 - Pf1N1B4_4557 0.57 -1.7 5,027,318 - Pf1N1B4_4557 0.74 -2.3 5,027,412 - Pf1N1B4_4557 0.81 -1.3 5,027,603 - +0.2 5,027,653 + -1.5 5,027,653 + -0.4 5,028,059 + Pf1N1B4_4558 0.39 +0.7 5,028,059 + Pf1N1B4_4558 0.39 -0.5 5,028,138 - -0.0 5,028,218 + Pf1N1B4_4558 0.58 -1.9 5,028,218 + Pf1N1B4_4558 0.58 -0.5 5,028,218 + Pf1N1B4_4558 0.58 -0.7 5,028,219 - Pf1N1B4_4558 0.58 +0.4 5,028,219 - Pf1N1B4_4558 0.58 +0.3
Or see this region's nucleotide sequence