Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4147

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4147 and Pf1N1B4_4148 are separated by 150 nucleotides Pf1N1B4_4147 - hypothetical protein, at 4,592,358 to 4,592,471 _4147 Pf1N1B4_4148 - hypothetical protein, at 4,592,622 to 4,592,738 _4148 Position (kb) 4592 4593Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4591.391 kb on + strandat 4591.765 kb on - strandat 4591.884 kb on + strandat 4592.020 kb on + strandat 4592.074 kb on - strandat 4592.109 kb on - strandat 4592.340 kb on + strandat 4592.340 kb on + strandat 4592.340 kb on + strandat 4592.340 kb on + strandat 4592.344 kb on - strandat 4592.416 kb on - strand, within Pf1N1B4_4147at 4592.544 kb on + strandat 4592.544 kb on + strandat 4592.544 kb on + strandat 4592.544 kb on + strandat 4592.586 kb on - strandat 4592.602 kb on - strandat 4592.654 kb on + strand, within Pf1N1B4_4148at 4592.736 kb on + strandat 4592.737 kb on - strandat 4592.737 kb on - strandat 4592.788 kb on + strandat 4592.788 kb on + strandat 4592.996 kb on + strandat 4592.996 kb on + strandat 4593.000 kb on + strandat 4593.000 kb on + strandat 4593.000 kb on + strandat 4593.003 kb on + strandat 4593.003 kb on + strandat 4593.153 kb on - strandat 4593.153 kb on - strandat 4593.366 kb on - strandat 4593.366 kb on - strandat 4593.370 kb on - strandat 4593.370 kb on - strandat 4593.413 kb on + strandat 4593.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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4,591,391 + -1.9
4,591,765 - -2.1
4,591,884 + -1.9
4,592,020 + -2.2
4,592,074 - -0.7
4,592,109 - +1.0
4,592,340 + +2.1
4,592,340 + +1.7
4,592,340 + +0.2
4,592,340 + +1.6
4,592,344 - -0.9
4,592,416 - Pf1N1B4_4147 0.51 +2.8
4,592,544 + +2.0
4,592,544 + -1.5
4,592,544 + -1.4
4,592,544 + -0.6
4,592,586 - -0.2
4,592,602 - -1.7
4,592,654 + Pf1N1B4_4148 0.27 -1.3
4,592,736 + +1.4
4,592,737 - +1.3
4,592,737 - -1.0
4,592,788 + +2.4
4,592,788 + +5.3
4,592,996 + -0.1
4,592,996 + -1.4
4,593,000 + +0.8
4,593,000 + -0.9
4,593,000 + +0.2
4,593,003 + -0.1
4,593,003 + -1.2
4,593,153 - -1.3
4,593,153 - -1.3
4,593,366 - +0.1
4,593,366 - +1.1
4,593,370 - +1.7
4,593,370 - -1.1
4,593,413 + +0.3
4,593,414 - -1.5

Or see this region's nucleotide sequence