Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_305 and Pf1N1B4_306 are separated by 217 nucleotides Pf1N1B4_306 and Pf1N1B4_307 are separated by 0 nucleotides Pf1N1B4_307 and Pf1N1B4_308 are separated by 247 nucleotides
Pf1N1B4_305 - Methyl-accepting chemotaxis protein, at 358,767 to 360,248
_305
Pf1N1B4_306 - Phage terminase, small subunit, at 360,466 to 360,834
_306
Pf1N1B4_307 - TesB-like acyl-CoA thioesterase 1, at 360,835 to 361,632
_307
Pf1N1B4_308 - FIG00956090: hypothetical protein, at 361,880 to 362,647
_308
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.970 kb on + strand, within Pf1N1B4_305 at 359.970 kb on + strand, within Pf1N1B4_305 at 359.970 kb on + strand, within Pf1N1B4_305 at 359.971 kb on - strand, within Pf1N1B4_305 at 360.063 kb on - strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.229 kb on + strand at 360.230 kb on - strand at 360.230 kb on - strand at 360.291 kb on - strand at 360.291 kb on - strand at 360.309 kb on + strand at 360.309 kb on + strand at 360.309 kb on + strand at 360.310 kb on - strand at 360.370 kb on + strand at 360.370 kb on + strand at 360.370 kb on + strand at 360.371 kb on - strand at 360.376 kb on + strand at 360.376 kb on + strand at 360.459 kb on - strand at 360.519 kb on + strand, within Pf1N1B4_306 at 360.520 kb on - strand, within Pf1N1B4_306 at 360.950 kb on + strand, within Pf1N1B4_307 at 360.950 kb on + strand, within Pf1N1B4_307 at 360.950 kb on + strand, within Pf1N1B4_307 at 360.950 kb on + strand, within Pf1N1B4_307 at 360.951 kb on - strand, within Pf1N1B4_307 at 360.951 kb on - strand, within Pf1N1B4_307 at 360.951 kb on - strand, within Pf1N1B4_307 at 360.951 kb on - strand, within Pf1N1B4_307 at 361.043 kb on + strand, within Pf1N1B4_307 at 361.044 kb on - strand, within Pf1N1B4_307 at 361.086 kb on + strand, within Pf1N1B4_307 at 361.087 kb on - strand, within Pf1N1B4_307 at 361.237 kb on - strand, within Pf1N1B4_307 at 361.238 kb on + strand, within Pf1N1B4_307 at 361.238 kb on + strand, within Pf1N1B4_307 at 361.238 kb on + strand, within Pf1N1B4_307 at 361.238 kb on + strand, within Pf1N1B4_307 at 361.239 kb on - strand, within Pf1N1B4_307 at 361.239 kb on - strand, within Pf1N1B4_307 at 361.239 kb on - strand, within Pf1N1B4_307 at 361.239 kb on - strand, within Pf1N1B4_307 at 361.239 kb on - strand, within Pf1N1B4_307 at 361.518 kb on - strand, within Pf1N1B4_307 at 361.578 kb on + strand at 361.578 kb on + strand at 361.579 kb on - strand at 361.579 kb on - strand at 361.699 kb on + strand at 361.700 kb on - strand at 362.115 kb on + strand, within Pf1N1B4_308 at 362.398 kb on - strand, within Pf1N1B4_308 at 362.398 kb on - strand, within Pf1N1B4_308 at 362.398 kb on - strand, within Pf1N1B4_308 at 362.534 kb on + strand, within Pf1N1B4_308 at 362.534 kb on + strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308 at 362.535 kb on - strand, within Pf1N1B4_308
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 359,970 + Pf1N1B4_305 0.81 -2.3 359,970 + Pf1N1B4_305 0.81 +1.2 359,970 + Pf1N1B4_305 0.81 +1.1 359,971 - Pf1N1B4_305 0.81 +0.6 360,063 - -0.3 360,229 + -0.5 360,229 + +0.6 360,229 + -2.1 360,229 + -0.6 360,229 + -3.2 360,229 + +0.4 360,229 + -0.7 360,229 + -1.3 360,229 + -1.8 360,230 - -1.1 360,230 - -0.5 360,291 - +0.9 360,291 - +1.7 360,309 + -2.8 360,309 + -1.2 360,309 + -0.9 360,310 - -0.6 360,370 + +0.6 360,370 + +2.5 360,370 + -1.8 360,371 - -2.3 360,376 + -0.7 360,376 + +0.7 360,459 - -1.0 360,519 + Pf1N1B4_306 0.14 -0.8 360,520 - Pf1N1B4_306 0.15 +1.0 360,950 + Pf1N1B4_307 0.14 -2.1 360,950 + Pf1N1B4_307 0.14 +0.3 360,950 + Pf1N1B4_307 0.14 +0.5 360,950 + Pf1N1B4_307 0.14 -2.0 360,951 - Pf1N1B4_307 0.15 +0.1 360,951 - Pf1N1B4_307 0.15 -0.3 360,951 - Pf1N1B4_307 0.15 +0.4 360,951 - Pf1N1B4_307 0.15 +0.8 361,043 + Pf1N1B4_307 0.26 -1.0 361,044 - Pf1N1B4_307 0.26 +1.5 361,086 + Pf1N1B4_307 0.31 -1.4 361,087 - Pf1N1B4_307 0.32 +1.5 361,237 - Pf1N1B4_307 0.50 -1.2 361,238 + Pf1N1B4_307 0.51 +1.5 361,238 + Pf1N1B4_307 0.51 -0.0 361,238 + Pf1N1B4_307 0.51 -0.2 361,238 + Pf1N1B4_307 0.51 -2.2 361,239 - Pf1N1B4_307 0.51 +1.7 361,239 - Pf1N1B4_307 0.51 +0.4 361,239 - Pf1N1B4_307 0.51 +0.0 361,239 - Pf1N1B4_307 0.51 -0.1 361,239 - Pf1N1B4_307 0.51 -1.5 361,518 - Pf1N1B4_307 0.86 +1.7 361,578 + +0.3 361,578 + -0.9 361,579 - -3.0 361,579 - +2.5 361,699 + +1.1 361,700 - -0.5 362,115 + Pf1N1B4_308 0.31 +0.9 362,398 - Pf1N1B4_308 0.67 -1.2 362,398 - Pf1N1B4_308 0.67 -1.5 362,398 - Pf1N1B4_308 0.67 -1.5 362,534 + Pf1N1B4_308 0.85 +1.0 362,534 + Pf1N1B4_308 0.85 -1.0 362,535 - Pf1N1B4_308 0.85 -3.3 362,535 - Pf1N1B4_308 0.85 +0.5 362,535 - Pf1N1B4_308 0.85 -1.6 362,535 - Pf1N1B4_308 0.85 -2.2 362,535 - Pf1N1B4_308 0.85 +0.6 362,535 - Pf1N1B4_308 0.85 +0.2
Or see this region's nucleotide sequence