Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_134 and Pf1N1B4_135 are separated by 0 nucleotides Pf1N1B4_135 and Pf1N1B4_136 are separated by 7 nucleotides
Pf1N1B4_134 - pyoverdine-specific efflux macA-like protein, at 147,967 to 149,127
_134
Pf1N1B4_135 - Pyoverdine efflux carrier and ATP binding protein, at 149,128 to 151,101
_135
Pf1N1B4_136 - Outer membrane pyoverdine eflux protein, at 151,109 to 152,503
_136
Position (kb) 149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.147 kb on + strand, within Pf1N1B4_134 at 148.147 kb on + strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.148 kb on - strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.241 kb on + strand, within Pf1N1B4_134 at 148.242 kb on - strand, within Pf1N1B4_134 at 148.352 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134 at 148.526 kb on - strand, within Pf1N1B4_134 at 148.834 kb on + strand, within Pf1N1B4_134 at 148.899 kb on - strand, within Pf1N1B4_134 at 148.899 kb on - strand, within Pf1N1B4_134 at 149.326 kb on + strand, within Pf1N1B4_135 at 149.470 kb on + strand, within Pf1N1B4_135 at 149.470 kb on + strand, within Pf1N1B4_135 at 149.924 kb on + strand, within Pf1N1B4_135 at 149.924 kb on + strand, within Pf1N1B4_135 at 150.129 kb on + strand, within Pf1N1B4_135 at 150.129 kb on + strand, within Pf1N1B4_135 at 150.256 kb on + strand, within Pf1N1B4_135 at 150.256 kb on + strand, within Pf1N1B4_135 at 150.256 kb on + strand, within Pf1N1B4_135 at 150.257 kb on - strand, within Pf1N1B4_135 at 150.319 kb on + strand, within Pf1N1B4_135 at 150.320 kb on - strand at 150.524 kb on - strand, within Pf1N1B4_135 at 151.108 kb on + strand at 151.109 kb on - strand at 151.448 kb on + strand, within Pf1N1B4_136 at 151.490 kb on + strand, within Pf1N1B4_136 at 151.494 kb on - strand, within Pf1N1B4_136 at 151.640 kb on + strand, within Pf1N1B4_136 at 151.641 kb on - strand, within Pf1N1B4_136 at 151.641 kb on - strand, within Pf1N1B4_136 at 151.641 kb on - strand, within Pf1N1B4_136
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 148,147 + Pf1N1B4_134 0.16 -2.1 148,147 + Pf1N1B4_134 0.16 -1.3 148,148 - Pf1N1B4_134 0.16 -1.1 148,148 - Pf1N1B4_134 0.16 -0.5 148,148 - Pf1N1B4_134 0.16 -1.5 148,148 - Pf1N1B4_134 0.16 +0.1 148,241 + Pf1N1B4_134 0.24 +0.8 148,241 + Pf1N1B4_134 0.24 -0.1 148,241 + Pf1N1B4_134 0.24 -1.5 148,241 + Pf1N1B4_134 0.24 -1.9 148,242 - Pf1N1B4_134 0.24 +0.4 148,352 - Pf1N1B4_134 0.33 -0.5 148,526 - Pf1N1B4_134 0.48 +1.6 148,526 - Pf1N1B4_134 0.48 -1.1 148,526 - Pf1N1B4_134 0.48 -1.7 148,834 + Pf1N1B4_134 0.75 +0.4 148,899 - Pf1N1B4_134 0.80 +2.6 148,899 - Pf1N1B4_134 0.80 -2.2 149,326 + Pf1N1B4_135 0.10 -1.2 149,470 + Pf1N1B4_135 0.17 -2.4 149,470 + Pf1N1B4_135 0.17 -0.1 149,924 + Pf1N1B4_135 0.40 +0.1 149,924 + Pf1N1B4_135 0.40 -1.8 150,129 + Pf1N1B4_135 0.51 +0.1 150,129 + Pf1N1B4_135 0.51 +0.6 150,256 + Pf1N1B4_135 0.57 -1.9 150,256 + Pf1N1B4_135 0.57 -1.1 150,256 + Pf1N1B4_135 0.57 -0.2 150,257 - Pf1N1B4_135 0.57 -0.4 150,319 + Pf1N1B4_135 0.60 -0.8 150,320 - -0.6 150,524 - Pf1N1B4_135 0.71 -1.8 151,108 + -0.1 151,109 - -1.0 151,448 + Pf1N1B4_136 0.24 +1.2 151,490 + Pf1N1B4_136 0.27 +2.0 151,494 - Pf1N1B4_136 0.28 +0.5 151,640 + Pf1N1B4_136 0.38 -1.2 151,641 - Pf1N1B4_136 0.38 +1.4 151,641 - Pf1N1B4_136 0.38 -1.8 151,641 - Pf1N1B4_136 0.38 -0.5
Or see this region's nucleotide sequence