Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28375

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
6,316,918	+		PFLU_RS28365	0.86	-0.8
6,316,918	+		PFLU_RS28365	0.86	+3.3
6,316,918	+		PFLU_RS28365	0.86	+2.2
6,316,918	+		PFLU_RS28365	0.86	-2.2
6,316,918	+		PFLU_RS28365	0.86	+1.2
6,316,918	+		PFLU_RS28365	0.86	+2.1
6,316,918	+		PFLU_RS28365	0.86	-1.4
6,316,919	-		PFLU_RS28365	0.86	+1.7
6,316,919	-		PFLU_RS28365	0.86	+2.4
6,316,919	-		PFLU_RS28365	0.86	+3.1
6,317,035	+				+0.2
6,317,036	-				+0.4
6,317,061	+				-1.2
6,317,061	+				-0.1
6,317,067	+				+1.0
6,317,086	+				+1.1
6,317,086	+				+0.5
6,317,086	+				-0.8
6,317,087	-				-1.4
6,317,087	-				-1.7
6,317,087	-				-0.8
6,317,087	-				+1.8
6,317,135	+				+1.0
6,317,135	+				+1.3
6,317,136	-				+2.1
6,317,136	-				-0.3
6,317,263	+		PFLU_RS28370	0.20	+2.6
6,317,263	+		PFLU_RS28370	0.20	-0.2
6,317,264	-		PFLU_RS28370	0.20	+5.5
6,317,264	-		PFLU_RS28370	0.20	+4.0
6,317,264	-		PFLU_RS28370	0.20	+0.5
6,317,264	-		PFLU_RS28370	0.20	+2.2
6,317,296	+		PFLU_RS28370	0.25	+2.0
6,317,296	+		PFLU_RS28370	0.25	+3.2
6,317,296	+		PFLU_RS28370	0.25	-0.8
6,317,296	+		PFLU_RS28370	0.25	+1.5
6,317,296	+		PFLU_RS28370	0.25	-0.6
6,317,296	+		PFLU_RS28370	0.25	-0.0
6,317,296	+		PFLU_RS28370	0.25	+2.5
6,317,296	+		PFLU_RS28370	0.25	+1.7
6,317,296	+		PFLU_RS28370	0.25	+2.2
6,317,297	-		PFLU_RS28370	0.25	+0.7
6,317,297	-		PFLU_RS28370	0.25	+2.5
6,317,297	-		PFLU_RS28370	0.25	+3.7
6,317,297	-		PFLU_RS28370	0.25	+3.0
6,317,297	-		PFLU_RS28370	0.25	+0.7
6,317,297	-		PFLU_RS28370	0.25	+1.6
6,317,297	-		PFLU_RS28370	0.25	+2.2
6,317,297	-		PFLU_RS28370	0.25	-1.8
6,317,297	-		PFLU_RS28370	0.25	-0.1
6,317,297	-		PFLU_RS28370	0.25	+0.5
6,317,297	-		PFLU_RS28370	0.25	+0.1
6,317,297	-		PFLU_RS28370	0.25	-0.4
6,317,297	-		PFLU_RS28370	0.25	+0.2
6,317,330	+		PFLU_RS28370	0.30	+0.7
6,317,330	+		PFLU_RS28370	0.30	+1.0
6,317,331	-		PFLU_RS28370	0.30	+1.0
6,317,535	+		PFLU_RS28370	0.60	-0.0
6,317,535	+		PFLU_RS28370	0.60	-1.8
6,317,535	+		PFLU_RS28370	0.60	+3.4
6,317,536	-		PFLU_RS28370	0.60	-1.2
6,317,664	-		PFLU_RS28370	0.78	+1.9
6,317,797	+				-1.5
6,317,798	-				+1.1
6,317,833	+				-1.8
6,317,833	+				-2.0
6,317,834	-				-0.3
6,317,834	-				+1.0
6,317,834	-				-0.0
6,318,661	+				-0.2
6,318,661	+				+0.6
6,318,661	+				+0.6
6,318,661	+				+0.2
6,318,661	+				+1.8
6,318,661	+				-1.1
6,318,662	-				-0.8
6,318,662	-				-0.3
6,318,662	-				-1.4
6,318,662	-				-0.6
6,318,662	-				+1.1
6,318,662	-				-1.6
6,318,662	-				-2.4
6,318,662	-				+1.1
6,318,662	-				-1.4
6,318,700	+				+0.1
6,318,700	+				+0.4
6,318,700	+				+0.4
6,318,700	+				-1.5
6,318,700	+				-1.0
6,318,701	-				-1.1
6,318,701	-				-0.4
6,318,701	-				+0.5
6,318,701	-				-1.1
6,318,701	-				+0.6
6,318,727	+				+1.0
6,318,727	+				+2.6
6,318,727	+				+1.2
6,318,728	-				-0.4
6,318,728	-				-2.1
6,318,740	+		PFLU_RS28380	0.11	+0.7
6,318,740	+		PFLU_RS28380	0.11	+2.2
6,318,741	-		PFLU_RS28380	0.12	-1.8
6,318,741	-		PFLU_RS28380	0.12	-0.8
6,318,741	-		PFLU_RS28380	0.12	-2.5
6,318,767	+		PFLU_RS28380	0.16	+0.6
6,318,781	+		PFLU_RS28380	0.18	+1.3
6,318,781	+		PFLU_RS28380	0.18	-0.0
6,318,781	+		PFLU_RS28380	0.18	-1.1
6,318,781	+		PFLU_RS28380	0.18	-0.6
6,318,781	+		PFLU_RS28380	0.18	-1.1
6,318,781	+		PFLU_RS28380	0.18	+0.1
6,318,782	-		PFLU_RS28380	0.18	+0.2
6,318,782	-		PFLU_RS28380	0.18	-0.9
6,318,782	-		PFLU_RS28380	0.18	-1.4
6,318,782	-		PFLU_RS28380	0.18	+2.0
6,318,782	-		PFLU_RS28380	0.18	-0.3
6,318,782	-		PFLU_RS28380	0.18	-2.7
6,318,937	+		PFLU_RS28380	0.45	-0.6
6,318,938	-		PFLU_RS28380	0.45	-1.4
6,318,959	+		PFLU_RS28380	0.48	-0.9
6,318,960	-		PFLU_RS28380	0.49	+1.0
6,318,960	-		PFLU_RS28380	0.49	-1.8
6,319,155	+		PFLU_RS28380	0.82	+0.3
6,319,156	-		PFLU_RS28380	0.82	-0.0
6,319,156	-		PFLU_RS28380	0.82	-1.0
6,319,156	-		PFLU_RS28380	0.82	-0.0
6,319,197	+		PFLU_RS28380	0.89	-1.0
6,319,197	+		PFLU_RS28380	0.89	-0.9
6,319,197	+		PFLU_RS28380	0.89	+0.2
6,319,197	+		PFLU_RS28380	0.89	+0.6
6,319,197	+		PFLU_RS28380	0.89	-1.4
6,319,198	-		PFLU_RS28380	0.89	+1.6
6,319,261	+				-1.3
6,319,262	-				+0.4
6,319,262	-				+2.6
6,319,262	-				-1.3
6,319,262	-				+0.1
6,319,262	-				+0.3
6,319,262	-				-0.8
6,319,364	+				-0.2
6,319,365	-				-0.4
6,319,370	+				-0.2
6,319,370	+				-0.0
6,319,370	+				+0.4
6,319,370	+				+1.2
6,319,370	+				+0.1
6,319,370	+				+1.2
6,319,370	+				+1.1
6,319,370	+				+0.6
6,319,370	+				+2.1
6,319,370	+				+2.3
6,319,370	+				-1.0
6,319,370	+				-1.4
6,319,371	-				-1.3
6,319,371	-				-2.8
6,319,371	-				-0.6
6,319,371	-				-1.1
6,319,371	-				-1.4
6,319,371	-				-0.9
6,319,371	-				-1.8
6,319,371	-				+1.0
6,319,371	-				+0.6
6,319,371	-				-1.7
6,319,371	-				-2.0
6,319,381	+				-1.7
6,319,381	+				+1.2
6,319,381	+				+1.9
6,319,381	+				-0.0
6,319,382	-				-2.1
6,319,501	+				-0.8
6,319,502	-				-1.3
6,319,502	-				-0.8
6,319,513	+		PFLU_RS28385	0.10	-3.0
6,319,513	+		PFLU_RS28385	0.10	-0.8
6,319,513	+		PFLU_RS28385	0.10	-1.0
6,319,513	+		PFLU_RS28385	0.10	-1.3
6,319,513	+		PFLU_RS28385	0.10	-2.2
6,319,513	+		PFLU_RS28385	0.10	-1.1
6,319,513	+		PFLU_RS28385	0.10	-0.8
6,319,513	+		PFLU_RS28385	0.10	-3.3
6,319,514	-		PFLU_RS28385	0.10	-2.5
6,319,514	-		PFLU_RS28385	0.10	-2.3
6,319,514	-		PFLU_RS28385	0.10	-0.2
6,319,514	-		PFLU_RS28385	0.10	+1.0
6,319,522	+		PFLU_RS28385	0.11	-1.6
6,319,522	+		PFLU_RS28385	0.11	-1.3
6,319,522	+		PFLU_RS28385	0.11	-2.9
6,319,523	-		PFLU_RS28385	0.11	-1.2
6,319,523	-		PFLU_RS28385	0.11	-0.9