Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24645

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
5,516,500	+				-0.2
5,516,501	-				-1.0
5,516,551	+				-2.6
5,516,564	+				+0.5
5,516,578	-				-1.0
5,516,631	+				-1.6
5,516,632	-				-3.4
5,516,642	-				-2.3
5,516,677	-				-2.4
5,516,750	+				-2.0
5,516,751	-				-3.3
5,516,751	-				-1.3
5,516,751	-				-1.9
5,516,751	-				-1.9
5,516,751	-				-2.4
5,516,851	+		PFLU_RS24640	0.20	-2.1
5,516,851	+		PFLU_RS24640	0.20	-0.6
5,516,851	+		PFLU_RS24640	0.20	-2.0
5,516,852	-		PFLU_RS24640	0.20	+0.2
5,516,852	-		PFLU_RS24640	0.20	-1.7
5,516,872	+		PFLU_RS24640	0.23	-1.8
5,516,935	+		PFLU_RS24640	0.31	-1.8
5,516,936	-		PFLU_RS24640	0.31	-2.0
5,517,206	+		PFLU_RS24640	0.67	-0.1
5,517,207	-		PFLU_RS24640	0.67	-3.3
5,517,207	-		PFLU_RS24640	0.67	-1.4
5,517,213	-		PFLU_RS24640	0.68	-2.3
5,517,230	-		PFLU_RS24640	0.70	-1.5
5,517,268	+		PFLU_RS24640	0.75	-1.5
5,517,268	+		PFLU_RS24640	0.75	-0.8
5,517,269	-		PFLU_RS24640	0.75	-2.1
5,517,297	+		PFLU_RS24640	0.79	-1.1
5,517,297	+		PFLU_RS24640	0.79	+0.2
5,517,297	+		PFLU_RS24640	0.79	-1.1
5,517,297	+		PFLU_RS24640	0.79	+0.9
5,517,297	+		PFLU_RS24640	0.79	-2.3
5,517,297	+		PFLU_RS24640	0.79	+0.8
5,517,297	+		PFLU_RS24640	0.79	-2.4
5,517,298	-		PFLU_RS24640	0.79	-0.3
5,517,298	-		PFLU_RS24640	0.79	-0.4
5,517,298	-		PFLU_RS24640	0.79	-1.5
5,517,301	+		PFLU_RS24640	0.79	-2.1
5,517,301	+		PFLU_RS24640	0.79	-0.6
5,517,301	+		PFLU_RS24640	0.79	-3.1
5,517,301	+		PFLU_RS24640	0.79	+0.2
5,517,301	+		PFLU_RS24640	0.79	-0.2
5,517,301	+		PFLU_RS24640	0.79	-0.1
5,517,301	+		PFLU_RS24640	0.79	-1.8
5,517,301	+		PFLU_RS24640	0.79	-1.5
5,517,301	+		PFLU_RS24640	0.79	-2.0
5,517,301	+		PFLU_RS24640	0.79	-1.8
5,517,301	+		PFLU_RS24640	0.79	-1.3
5,517,301	+		PFLU_RS24640	0.79	-0.1
5,517,301	+		PFLU_RS24640	0.79	-0.4
5,517,301	+		PFLU_RS24640	0.79	+1.2
5,517,302	-		PFLU_RS24640	0.79	-1.5
5,517,302	-		PFLU_RS24640	0.79	-0.6
5,517,302	-		PFLU_RS24640	0.79	-1.5
5,517,302	-		PFLU_RS24640	0.79	-2.4
5,517,302	-		PFLU_RS24640	0.79	-1.6
5,517,302	-		PFLU_RS24640	0.79	-1.0
5,517,302	-		PFLU_RS24640	0.79	-0.6
5,517,302	-		PFLU_RS24640	0.79	-0.4
5,517,302	-		PFLU_RS24640	0.79	-2.6
5,517,302	-		PFLU_RS24640	0.79	-2.0
5,517,345	-		PFLU_RS24640	0.85	-1.9
5,517,383	+				+1.2
5,517,383	+				-3.0
5,517,383	+				-0.7
5,517,383	+				+2.1
5,517,383	+				+0.6
5,517,384	-				+0.2
5,517,384	-				-0.1
5,517,384	-				-1.6
5,517,384	-				-2.7
5,517,384	-				-1.0
5,517,384	-				-1.7
5,517,384	-				-1.6
5,517,384	-				-0.7
5,517,384	-				-1.5
5,517,398	+				+0.5
5,517,398	+				+0.4
5,517,398	+				-1.5
5,517,399	-				-3.0
5,517,399	-				-2.2
5,517,399	-				-2.7
5,517,399	-				-2.6
5,517,401	+				+0.2
5,517,401	+				-0.3
5,517,401	+				+7.0
5,517,402	-				-1.4
5,517,402	-				-0.9
5,517,402	-				-1.6
5,517,402	-				-1.4
5,517,402	-				-2.0
5,517,402	-				-2.4
5,517,434	+				+0.6
5,517,434	+				+4.3
5,517,434	+				+2.2
5,517,434	+				+3.1
5,517,434	+				+3.8
5,517,435	-				-2.5
5,517,435	-				-1.3
5,517,435	-				-1.6
5,517,435	-				-0.4
5,517,435	-				+0.2
5,517,588	+		PFLU_RS24645	0.11	-1.3
5,517,588	+		PFLU_RS24645	0.11	-2.0
5,517,588	+		PFLU_RS24645	0.11	-2.2
5,517,589	-		PFLU_RS24645	0.11	-2.7
5,517,589	-		PFLU_RS24645	0.11	-1.7
5,517,791	+		PFLU_RS24645	0.29	-3.5
5,517,792	-		PFLU_RS24645	0.29	-1.7
5,517,792	-		PFLU_RS24645	0.29	-0.4
5,517,792	-		PFLU_RS24645	0.29	-1.4
5,517,834	+		PFLU_RS24645	0.33	-1.3
5,517,834	+		PFLU_RS24645	0.33	-1.8
5,517,834	+		PFLU_RS24645	0.33	-3.4
5,517,834	+		PFLU_RS24645	0.33	+1.2
5,517,834	+		PFLU_RS24645	0.33	-3.3
5,517,834	+		PFLU_RS24645	0.33	-2.6
5,517,834	+		PFLU_RS24645	0.33	-1.8
5,517,834	+		PFLU_RS24645	0.33	-2.1
5,517,834	+		PFLU_RS24645	0.33	-1.3
5,517,834	+		PFLU_RS24645	0.33	-2.6
5,517,834	+		PFLU_RS24645	0.33	-3.2
5,517,835	-		PFLU_RS24645	0.33	-2.3
5,517,835	-		PFLU_RS24645	0.33	-1.4
5,517,835	-		PFLU_RS24645	0.33	-2.6
5,517,835	-		PFLU_RS24645	0.33	-1.0
5,517,835	-		PFLU_RS24645	0.33	-3.0
5,517,835	-		PFLU_RS24645	0.33	-2.2
5,517,835	-		PFLU_RS24645	0.33	-1.5
5,517,835	-		PFLU_RS24645	0.33	-2.9
5,517,835	-		PFLU_RS24645	0.33	-0.6
5,517,906	+		PFLU_RS24645	0.40	+0.2
5,517,907	-		PFLU_RS24645	0.40	-1.2
5,517,907	-		PFLU_RS24645	0.40	-2.6
5,517,907	-		PFLU_RS24645	0.40	-0.1
5,517,907	-		PFLU_RS24645	0.40	-1.7
5,517,907	-		PFLU_RS24645	0.40	-2.8
5,517,907	-		PFLU_RS24645	0.40	-0.8
5,517,907	-		PFLU_RS24645	0.40	-1.3
5,518,029	+		PFLU_RS24645	0.51	-1.3
5,518,029	+		PFLU_RS24645	0.51	-2.6
5,518,029	+		PFLU_RS24645	0.51	-3.3
5,518,029	+		PFLU_RS24645	0.51	-1.7
5,518,029	+		PFLU_RS24645	0.51	-2.1
5,518,029	+		PFLU_RS24645	0.51	-3.8
5,518,029	+		PFLU_RS24645	0.51	-3.2
5,518,029	+		PFLU_RS24645	0.51	-1.8
5,518,029	+		PFLU_RS24645	0.51	-1.3
5,518,029	+		PFLU_RS24645	0.51	-0.6
5,518,030	-		PFLU_RS24645	0.51	+0.6
5,518,030	-		PFLU_RS24645	0.51	-1.5
5,518,030	-		PFLU_RS24645	0.51	-0.6
5,518,030	-		PFLU_RS24645	0.51	-2.3
5,518,030	-		PFLU_RS24645	0.51	-1.3
5,518,083	+		PFLU_RS24645	0.56	-1.4
5,518,083	+		PFLU_RS24645	0.56	-1.5
5,518,083	+		PFLU_RS24645	0.56	-3.0
5,518,083	+		PFLU_RS24645	0.56	-1.8
5,518,083	+		PFLU_RS24645	0.56	-2.4
5,518,083	+		PFLU_RS24645	0.56	-1.5
5,518,083	+		PFLU_RS24645	0.56	-2.0
5,518,084	-		PFLU_RS24645	0.56	-2.4
5,518,278	+		PFLU_RS24645	0.73	-2.5
5,518,278	+		PFLU_RS24645	0.73	-0.6
5,518,278	+		PFLU_RS24645	0.73	-2.0
5,518,278	+		PFLU_RS24645	0.73	-1.6
5,518,278	+		PFLU_RS24645	0.73	-1.5
5,518,278	+		PFLU_RS24645	0.73	-1.3
5,518,278	+		PFLU_RS24645	0.73	-1.9
5,518,279	-		PFLU_RS24645	0.73	-2.2
5,518,279	-		PFLU_RS24645	0.73	-0.6
5,518,279	-		PFLU_RS24645	0.73	-2.0
5,518,279	-		PFLU_RS24645	0.73	-3.4
5,518,446	+		PFLU_RS24645	0.88	-1.8
5,518,446	+		PFLU_RS24645	0.88	-1.6
5,518,447	-		PFLU_RS24645	0.88	-1.2
5,518,447	-		PFLU_RS24645	0.88	-1.3
5,518,447	-		PFLU_RS24645	0.88	-2.8
5,518,534	+				-2.3
5,518,534	+				-1.6
5,518,534	+				-0.6
5,518,534	+				-0.8
5,518,534	+				-1.8
5,518,535	-				-3.2
5,518,535	-				+2.2
5,518,535	-				-0.6
5,518,535	-				-3.8
5,518,535	-				-2.1
5,518,535	-				-1.4
5,518,535	-				-2.8
5,518,535	-				-2.5
5,518,720	+		PFLU_RS24650	0.15	+0.2
5,518,720	+		PFLU_RS24650	0.15	-1.2
5,518,721	-		PFLU_RS24650	0.15	-2.7
5,518,721	-		PFLU_RS24650	0.15	-2.0
5,518,721	-		PFLU_RS24650	0.15	-2.9
5,518,729	+		PFLU_RS24650	0.16	-2.2
5,518,729	+		PFLU_RS24650	0.16	-3.1
5,518,729	+		PFLU_RS24650	0.16	-3.4
5,518,729	+		PFLU_RS24650	0.16	-1.0
5,518,887	+		PFLU_RS24650	0.32	-1.4
5,518,887	+		PFLU_RS24650	0.32	-2.1
5,518,888	-		PFLU_RS24650	0.32	-2.1
5,518,888	-		PFLU_RS24650	0.32	-2.4
5,518,888	-		PFLU_RS24650	0.32	-1.9
5,518,959	+		PFLU_RS24650	0.39	-1.7
5,518,959	+		PFLU_RS24650	0.39	-2.1
5,518,959	+		PFLU_RS24650	0.39	-2.1
5,518,959	+		PFLU_RS24650	0.39	-2.0
5,518,959	+		PFLU_RS24650	0.39	-1.5
5,518,959	+		PFLU_RS24650	0.39	-2.8
5,518,959	+		PFLU_RS24650	0.39	+1.2
5,518,959	+		PFLU_RS24650	0.39	-2.3
5,518,959	+		PFLU_RS24650	0.39	-4.0
5,518,959	+		PFLU_RS24650	0.39	-1.3
5,518,960	-		PFLU_RS24650	0.39	-1.5
5,518,960	-		PFLU_RS24650	0.39	-1.8
5,518,960	-		PFLU_RS24650	0.39	-2.3
5,518,960	-		PFLU_RS24650	0.39	-2.3
5,518,960	-		PFLU_RS24650	0.39	-1.7
5,518,960	-		PFLU_RS24650	0.39	-2.2
5,518,960	-		PFLU_RS24650	0.39	-1.8
5,518,960	-		PFLU_RS24650	0.39	-0.2
5,518,960	-		PFLU_RS24650	0.39	-0.6
5,518,960	-		PFLU_RS24650	0.39	-2.5
5,518,960	-		PFLU_RS24650	0.39	-2.4
5,518,961	+		PFLU_RS24650	0.39	-1.6
5,518,961	+		PFLU_RS24650	0.39	-1.6
5,518,961	+		PFLU_RS24650	0.39	-1.2
5,518,961	+		PFLU_RS24650	0.39	-2.9
5,518,961	+		PFLU_RS24650	0.39	-2.4
5,518,961	+		PFLU_RS24650	0.39	-2.2
5,518,961	+		PFLU_RS24650	0.39	-1.5
5,518,961	+		PFLU_RS24650	0.39	-1.2
5,518,961	+		PFLU_RS24650	0.39	-1.6
5,518,962	-		PFLU_RS24650	0.39	-2.9
5,518,962	-		PFLU_RS24650	0.39	-1.3
5,518,962	-		PFLU_RS24650	0.39	-1.8
5,518,962	-		PFLU_RS24650	0.39	-3.1
5,518,962	-		PFLU_RS24650	0.39	-2.0
5,518,962	-		PFLU_RS24650	0.39	-2.4
5,518,962	-		PFLU_RS24650	0.39	-0.8
5,518,962	-		PFLU_RS24650	0.39	-1.5
5,518,962	-		PFLU_RS24650	0.39	-2.2
5,518,962	-		PFLU_RS24650	0.39	-2.4
5,518,962	-		PFLU_RS24650	0.39	-2.1
5,518,962	-		PFLU_RS24650	0.39	-1.4
5,519,010	+		PFLU_RS24650	0.44	-1.7
5,519,107	-		PFLU_RS24650	0.53	-2.8
5,519,107	-		PFLU_RS24650	0.53	-2.1
5,519,107	-		PFLU_RS24650	0.53	-2.8
5,519,107	-		PFLU_RS24650	0.53	-3.1
5,519,107	-		PFLU_RS24650	0.53	-2.5
5,519,305	+		PFLU_RS24650	0.73	-1.2
5,519,305	+		PFLU_RS24650	0.73	-1.4
5,519,306	-		PFLU_RS24650	0.73	-2.2
5,519,306	-		PFLU_RS24650	0.73	-1.4
5,519,306	-		PFLU_RS24650	0.73	-2.3
5,519,306	-		PFLU_RS24650	0.73	-2.1
5,519,318	+		PFLU_RS24650	0.74	-0.8
5,519,318	+		PFLU_RS24650	0.74	-1.3
5,519,491	+				-0.4
5,519,491	+				-2.2
5,519,491	+				-2.7
5,519,491	+				-0.2
5,519,492	-				-2.2
5,519,492	-				-2.5