Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19400

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
4,385,285	+		PFLU_RS19390	0.86	+1.0
4,385,286	-		PFLU_RS19390	0.86	-0.2
4,385,300	+		PFLU_RS19390	0.87	+0.8
4,385,300	+		PFLU_RS19390	0.87	+2.1
4,385,300	+		PFLU_RS19390	0.87	-1.7
4,385,300	+		PFLU_RS19390	0.87	+1.1
4,385,300	+		PFLU_RS19390	0.87	-1.2
4,385,300	+		PFLU_RS19390	0.87	+1.5
4,385,301	-		PFLU_RS19390	0.87	-0.7
4,385,301	-		PFLU_RS19390	0.87	-0.2
4,385,301	-		PFLU_RS19390	0.87	-1.9
4,385,301	-		PFLU_RS19390	0.87	+0.1
4,385,301	-		PFLU_RS19390	0.87	-0.2
4,385,301	-		PFLU_RS19390	0.87	+1.0
4,385,301	-		PFLU_RS19390	0.87	+1.2
4,385,304	+		PFLU_RS19390	0.88	+0.1
4,385,304	+		PFLU_RS19390	0.88	-2.8
4,385,305	-		PFLU_RS19390	0.88	+0.2
4,385,305	-		PFLU_RS19390	0.88	+1.5
4,385,305	-		PFLU_RS19390	0.88	-1.2
4,385,305	-		PFLU_RS19390	0.88	+1.0
4,385,305	-		PFLU_RS19390	0.88	+0.4
4,385,305	-		PFLU_RS19390	0.88	-2.0
4,385,305	-		PFLU_RS19390	0.88	-1.2
4,385,305	-		PFLU_RS19390	0.88	+1.1
4,385,305	-		PFLU_RS19390	0.88	+2.3
4,385,305	-		PFLU_RS19390	0.88	-1.3
4,385,305	-		PFLU_RS19390	0.88	-0.5
4,385,436	+				-1.4
4,385,436	+				-1.9
4,385,436	+				+0.5
4,385,436	+				-1.9
4,385,437	-				-0.7
4,385,458	+				+2.0
4,385,458	+				+1.1
4,385,458	+				+1.4
4,385,459	-				-1.0
4,385,459	-				-2.9
4,385,459	-				+1.2
4,385,484	-				+1.6
4,385,527	+				+2.1
4,385,527	+				+1.0
4,385,528	-				+4.5
4,385,528	-				-0.6
4,385,590	+				+0.4
4,385,649	+		PFLU_RS19395	0.19	-1.8
4,385,650	-		PFLU_RS19395	0.19	-0.9
4,385,650	-		PFLU_RS19395	0.19	-2.4
4,385,869	+		PFLU_RS19395	0.63	-0.2
4,385,980	+		PFLU_RS19395	0.86	-1.2
4,385,980	+		PFLU_RS19395	0.86	-2.1
4,385,980	+		PFLU_RS19395	0.86	-2.2
4,385,980	+		PFLU_RS19395	0.86	-1.0
4,385,980	+		PFLU_RS19395	0.86	+0.1
4,385,980	+		PFLU_RS19395	0.86	-0.4
4,385,980	+		PFLU_RS19395	0.86	-0.7
4,385,981	-		PFLU_RS19395	0.86	-0.8
4,385,981	-		PFLU_RS19395	0.86	-0.7
4,385,981	-		PFLU_RS19395	0.86	-2.8
4,385,990	+		PFLU_RS19395	0.88	+1.2
4,385,990	+		PFLU_RS19395	0.88	+0.1
4,385,990	+		PFLU_RS19395	0.88	+0.7
4,385,990	+		PFLU_RS19395	0.88	+0.3
4,385,991	-		PFLU_RS19395	0.88	+0.5
4,385,991	-		PFLU_RS19395	0.88	-1.5
4,385,991	-		PFLU_RS19395	0.88	+0.1
4,386,054	+				+3.2
4,386,054	+				-1.8
4,386,054	+				-1.5
4,386,055	-				+1.8
4,386,079	-				-1.9
4,386,079	-				-1.9
4,386,079	-				+2.1
4,386,079	-				-2.9
4,386,079	-				-1.2
4,386,079	-				+1.4
4,386,079	-				+0.4
4,387,391	-				+1.0
4,387,566	+		PFLU_RS19405	0.23	-0.0
4,387,566	+		PFLU_RS19405	0.23	-2.1
4,387,566	+		PFLU_RS19405	0.23	-1.7
4,387,566	+		PFLU_RS19405	0.23	+0.9
4,387,566	+		PFLU_RS19405	0.23	-1.7
4,387,566	+		PFLU_RS19405	0.23	-0.7
4,387,567	-		PFLU_RS19405	0.23	-2.4
4,387,567	-		PFLU_RS19405	0.23	-2.5
4,387,574	+		PFLU_RS19405	0.24	+1.1
4,387,574	+		PFLU_RS19405	0.24	-1.1
4,387,574	+		PFLU_RS19405	0.24	+2.0
4,387,574	+		PFLU_RS19405	0.24	+0.2
4,387,574	+		PFLU_RS19405	0.24	-1.2
4,387,574	+		PFLU_RS19405	0.24	-0.0
4,387,574	+		PFLU_RS19405	0.24	-0.2
4,387,575	-		PFLU_RS19405	0.24	-1.5
4,387,575	-		PFLU_RS19405	0.24	+2.6
4,387,575	-		PFLU_RS19405	0.24	+1.2
4,387,575	-		PFLU_RS19405	0.24	+0.1
4,387,575	-		PFLU_RS19405	0.24	+3.7
4,387,575	-		PFLU_RS19405	0.24	+0.6
4,387,575	-		PFLU_RS19405	0.24	-1.3
4,387,575	-		PFLU_RS19405	0.24	+0.6
4,387,575	-		PFLU_RS19405	0.24	+1.2
4,387,577	+		PFLU_RS19405	0.24	-1.5
4,387,577	+		PFLU_RS19405	0.24	+1.2
4,387,577	+		PFLU_RS19405	0.24	+0.4
4,387,577	+		PFLU_RS19405	0.24	+0.6
4,387,577	+		PFLU_RS19405	0.24	-0.4
4,387,578	-		PFLU_RS19405	0.24	-1.4
4,387,578	-		PFLU_RS19405	0.24	+0.7
4,387,578	-		PFLU_RS19405	0.24	+1.1
4,387,578	-		PFLU_RS19405	0.24	-0.5
4,387,578	-		PFLU_RS19405	0.24	-1.2
4,387,578	-		PFLU_RS19405	0.24	-0.7
4,387,578	-		PFLU_RS19405	0.24	+0.1
4,387,578	-		PFLU_RS19405	0.24	+0.1
4,387,676	+		PFLU_RS19405	0.36	+0.1
4,387,676	+		PFLU_RS19405	0.36	-1.5
4,387,676	+		PFLU_RS19405	0.36	+1.4
4,387,676	+		PFLU_RS19405	0.36	+1.6
4,387,676	+		PFLU_RS19405	0.36	-0.3
4,387,677	-		PFLU_RS19405	0.36	-1.2
4,387,677	-		PFLU_RS19405	0.36	-1.9
4,387,677	-		PFLU_RS19405	0.36	-2.3
4,387,679	+		PFLU_RS19405	0.36	-0.1
4,387,679	+		PFLU_RS19405	0.36	-1.5
4,387,680	-		PFLU_RS19405	0.37	-0.9
4,387,680	-		PFLU_RS19405	0.37	-2.4
4,387,680	-		PFLU_RS19405	0.37	+0.6
4,387,680	-		PFLU_RS19405	0.37	+0.8
4,387,680	-		PFLU_RS19405	0.37	-1.4
4,387,790	+		PFLU_RS19405	0.50	+2.2
4,387,790	+		PFLU_RS19405	0.50	-0.9
4,387,790	+		PFLU_RS19405	0.50	-2.3
4,387,791	-		PFLU_RS19405	0.50	+0.1
4,387,791	-		PFLU_RS19405	0.50	+0.3
4,387,791	-		PFLU_RS19405	0.50	-1.1
4,387,791	-		PFLU_RS19405	0.50	-0.9
4,387,964	+		PFLU_RS19405	0.71	-0.7
4,387,964	+		PFLU_RS19405	0.71	-1.5
4,387,964	+		PFLU_RS19405	0.71	+1.6
4,387,964	+		PFLU_RS19405	0.71	-0.4
4,387,964	+		PFLU_RS19405	0.71	+0.1
4,387,964	+		PFLU_RS19405	0.71	-0.9
4,387,964	+		PFLU_RS19405	0.71	-3.4
4,387,964	+		PFLU_RS19405	0.71	+0.6
4,387,964	+		PFLU_RS19405	0.71	-1.8
4,387,965	-		PFLU_RS19405	0.71	-1.1
4,387,965	-		PFLU_RS19405	0.71	+0.2
4,387,965	-		PFLU_RS19405	0.71	+0.7
4,387,965	-		PFLU_RS19405	0.71	+0.4
4,387,965	-		PFLU_RS19405	0.71	+0.1
4,387,965	-		PFLU_RS19405	0.71	+1.4
4,387,965	-		PFLU_RS19405	0.71	-1.5
4,387,965	-		PFLU_RS19405	0.71	+1.1
4,387,994	+		PFLU_RS19405	0.74	+2.6
4,387,995	-		PFLU_RS19405	0.74	+1.6