Strain Fitness in Dechlorosoma suillum PS around Dsui_2992

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2991 and Dsui_2992 are separated by 3 nucleotidesDsui_2992 and Dsui_2993 are separated by 94 nucleotides Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253 _2991 Dsui_2992: Dsui_2992 - hypothetical protein, at 3,201,257 to 3,202,438 _2992 Dsui_2993: Dsui_2993 - hypothetical protein, at 3,202,533 to 3,203,900 _2993 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3200.301 kb on - strand, within Dsui_2991at 3200.334 kb on - strandat 3200.421 kb on + strand, within Dsui_2991at 3200.421 kb on + strand, within Dsui_2991at 3200.429 kb on - strand, within Dsui_2991at 3200.524 kb on + strandat 3200.524 kb on + strand, within Dsui_2991at 3200.790 kb on + strand, within Dsui_2991at 3200.892 kb on - strandat 3201.328 kb on + strandat 3201.336 kb on - strandat 3201.563 kb on + strand, within Dsui_2992at 3201.592 kb on + strand, within Dsui_2992at 3201.805 kb on + strand, within Dsui_2992at 3201.823 kb on - strandat 3201.823 kb on - strandat 3201.832 kb on - strandat 3201.963 kb on + strandat 3201.971 kb on - strand, within Dsui_2992at 3201.977 kb on + strand, within Dsui_2992at 3202.002 kb on - strand, within Dsui_2992at 3202.085 kb on - strandat 3202.112 kb on + strand, within Dsui_2992at 3202.117 kb on + strand, within Dsui_2992at 3202.139 kb on - strand, within Dsui_2992at 3202.159 kb on + strand, within Dsui_2992at 3202.214 kb on + strand, within Dsui_2992at 3202.224 kb on + strand, within Dsui_2992at 3202.305 kb on + strand, within Dsui_2992at 3202.328 kb on + strandat 3202.388 kb on + strandat 3202.434 kb on + strandat 3202.554 kb on + strandat 3202.598 kb on - strandat 3202.981 kb on - strandat 3203.014 kb on - strand, within Dsui_2993at 3203.072 kb on - strand, within Dsui_2993at 3203.087 kb on + strandat 3203.087 kb on + strandat 3203.133 kb on - strandat 3203.204 kb on - strand, within Dsui_2993at 3203.323 kb on - strandat 3203.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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3,200,301 - Dsui_2991 0.61 -1.5
3,200,334 - -0.5
3,200,421 + Dsui_2991 0.66 +0.5
3,200,421 + Dsui_2991 0.66 -1.0
3,200,429 - Dsui_2991 0.66 -2.5
3,200,524 + +2.0
3,200,524 + Dsui_2991 0.70 -3.0
3,200,790 + Dsui_2991 0.81 -1.9
3,200,892 - +0.5
3,201,328 + -0.5
3,201,336 - +0.5
3,201,563 + Dsui_2992 0.26 -0.5
3,201,592 + Dsui_2992 0.28 +0.5
3,201,805 + Dsui_2992 0.46 +0.5
3,201,823 - +0.5
3,201,823 - -0.5
3,201,832 - -0.5
3,201,963 + +0.5
3,201,971 - Dsui_2992 0.60 -0.1
3,201,977 + Dsui_2992 0.61 -1.5
3,202,002 - Dsui_2992 0.63 -2.1
3,202,085 - -0.5
3,202,112 + Dsui_2992 0.72 -1.5
3,202,117 + Dsui_2992 0.73 -1.1
3,202,139 - Dsui_2992 0.75 -2.5
3,202,159 + Dsui_2992 0.76 -1.1
3,202,214 + Dsui_2992 0.81 +1.5
3,202,224 + Dsui_2992 0.82 -3.0
3,202,305 + Dsui_2992 0.89 +0.5
3,202,328 + +0.5
3,202,388 + +0.5
3,202,434 + -1.5
3,202,554 + +0.5
3,202,598 - -0.5
3,202,981 - +0.5
3,203,014 - Dsui_2993 0.35 -2.1
3,203,072 - Dsui_2993 0.39 -0.5
3,203,087 + +0.5
3,203,087 + +0.5
3,203,133 - +0.5
3,203,204 - Dsui_2993 0.49 -1.1
3,203,323 - +0.5
3,203,404 + +0.5

Or see this region's nucleotide sequence