Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2991 and Dsui_2992 are separated by 3 nucleotides Dsui_2992 and Dsui_2993 are separated by 94 nucleotides
Dsui_2991: Dsui_2991 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,198,830 to 3,201,253
_2991
Dsui_2992: Dsui_2992 - hypothetical protein, at 3,201,257 to 3,202,438
_2992
Dsui_2993: Dsui_2993 - hypothetical protein, at 3,202,533 to 3,203,900
_2993
Position (kb)
3201
3202
3203 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3200.301 kb on - strand, within Dsui_2991 at 3200.334 kb on - strand at 3200.421 kb on + strand, within Dsui_2991 at 3200.421 kb on + strand, within Dsui_2991 at 3200.429 kb on - strand, within Dsui_2991 at 3200.524 kb on + strand at 3200.524 kb on + strand, within Dsui_2991 at 3200.790 kb on + strand, within Dsui_2991 at 3200.892 kb on - strand at 3201.328 kb on + strand at 3201.336 kb on - strand at 3201.563 kb on + strand, within Dsui_2992 at 3201.592 kb on + strand, within Dsui_2992 at 3201.805 kb on + strand, within Dsui_2992 at 3201.823 kb on - strand at 3201.823 kb on - strand at 3201.832 kb on - strand at 3201.963 kb on + strand at 3201.971 kb on - strand, within Dsui_2992 at 3201.977 kb on + strand, within Dsui_2992 at 3202.002 kb on - strand, within Dsui_2992 at 3202.085 kb on - strand at 3202.112 kb on + strand, within Dsui_2992 at 3202.117 kb on + strand, within Dsui_2992 at 3202.139 kb on - strand, within Dsui_2992 at 3202.159 kb on + strand, within Dsui_2992 at 3202.214 kb on + strand, within Dsui_2992 at 3202.224 kb on + strand, within Dsui_2992 at 3202.305 kb on + strand, within Dsui_2992 at 3202.328 kb on + strand at 3202.388 kb on + strand at 3202.434 kb on + strand at 3202.554 kb on + strand at 3202.598 kb on - strand at 3202.981 kb on - strand at 3203.014 kb on - strand, within Dsui_2993 at 3203.072 kb on - strand, within Dsui_2993 at 3203.087 kb on + strand at 3203.087 kb on + strand at 3203.133 kb on - strand at 3203.204 kb on - strand, within Dsui_2993 at 3203.323 kb on - strand at 3203.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 3,200,301 - Dsui_2991 0.61 -1.5 3,200,334 - -0.5 3,200,421 + Dsui_2991 0.66 +0.5 3,200,421 + Dsui_2991 0.66 -1.0 3,200,429 - Dsui_2991 0.66 -2.5 3,200,524 + +2.0 3,200,524 + Dsui_2991 0.70 -3.0 3,200,790 + Dsui_2991 0.81 -1.9 3,200,892 - +0.5 3,201,328 + -0.5 3,201,336 - +0.5 3,201,563 + Dsui_2992 0.26 -0.5 3,201,592 + Dsui_2992 0.28 +0.5 3,201,805 + Dsui_2992 0.46 +0.5 3,201,823 - +0.5 3,201,823 - -0.5 3,201,832 - -0.5 3,201,963 + +0.5 3,201,971 - Dsui_2992 0.60 -0.1 3,201,977 + Dsui_2992 0.61 -1.5 3,202,002 - Dsui_2992 0.63 -2.1 3,202,085 - -0.5 3,202,112 + Dsui_2992 0.72 -1.5 3,202,117 + Dsui_2992 0.73 -1.1 3,202,139 - Dsui_2992 0.75 -2.5 3,202,159 + Dsui_2992 0.76 -1.1 3,202,214 + Dsui_2992 0.81 +1.5 3,202,224 + Dsui_2992 0.82 -3.0 3,202,305 + Dsui_2992 0.89 +0.5 3,202,328 + +0.5 3,202,388 + +0.5 3,202,434 + -1.5 3,202,554 + +0.5 3,202,598 - -0.5 3,202,981 - +0.5 3,203,014 - Dsui_2993 0.35 -2.1 3,203,072 - Dsui_2993 0.39 -0.5 3,203,087 + +0.5 3,203,087 + +0.5 3,203,133 - +0.5 3,203,204 - Dsui_2993 0.49 -1.1 3,203,323 - +0.5 3,203,404 + +0.5
Or see this region's nucleotide sequence