Strain Fitness in Dechlorosoma suillum PS around Dsui_2708

Experiment: ALP with nitrite 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2706 and Dsui_2707 are separated by 21 nucleotidesDsui_2707 and Dsui_2708 are separated by 56 nucleotidesDsui_2708 and Dsui_2709 are separated by 22 nucleotidesDsui_2709 and Dsui_2710 are separated by 59 nucleotides Dsui_2706: Dsui_2706 - adenine phosphoribosyltransferase, at 2,863,016 to 2,863,543 _2706 Dsui_2707: Dsui_2707 - putative permease, at 2,863,565 to 2,864,470 _2707 Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732 _2708 Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573 _2709 Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814 _2710 Position (kb) 2864 2865 2866Strain fitness (log2 ratio) -2 -1 0 1at 2863.529 kb on - strandat 2863.631 kb on - strandat 2863.740 kb on + strandat 2863.759 kb on + strand, within Dsui_2707at 2863.772 kb on - strand, within Dsui_2707at 2863.844 kb on + strand, within Dsui_2707at 2863.926 kb on + strand, within Dsui_2707at 2863.934 kb on - strandat 2863.948 kb on + strandat 2863.971 kb on - strand, within Dsui_2707at 2864.099 kb on + strandat 2864.130 kb on + strand, within Dsui_2707at 2864.138 kb on - strand, within Dsui_2707at 2864.153 kb on - strand, within Dsui_2707at 2864.310 kb on + strand, within Dsui_2707at 2864.345 kb on + strand, within Dsui_2707at 2864.383 kb on - strandat 2864.383 kb on - strandat 2864.393 kb on - strandat 2864.393 kb on - strandat 2864.393 kb on - strandat 2864.505 kb on + strandat 2864.505 kb on + strandat 2864.513 kb on - strandat 2864.548 kb on + strandat 2864.561 kb on - strandat 2864.583 kb on + strandat 2864.583 kb on + strandat 2864.583 kb on + strandat 2864.591 kb on - strandat 2864.593 kb on + strandat 2864.628 kb on + strandat 2864.636 kb on - strandat 2864.664 kb on + strand, within Dsui_2708at 2864.726 kb on + strand, within Dsui_2708at 2864.726 kb on + strand, within Dsui_2708at 2864.734 kb on - strand, within Dsui_2708at 2864.913 kb on + strand, within Dsui_2708at 2864.937 kb on + strand, within Dsui_2708at 2864.963 kb on + strand, within Dsui_2708at 2865.006 kb on + strand, within Dsui_2708at 2865.014 kb on - strand, within Dsui_2708at 2865.081 kb on - strandat 2865.081 kb on - strandat 2865.081 kb on - strandat 2865.321 kb on - strandat 2865.503 kb on + strand, within Dsui_2708at 2865.503 kb on + strand, within Dsui_2708at 2865.534 kb on - strand, within Dsui_2708at 2865.588 kb on + strand, within Dsui_2708at 2865.709 kb on - strandat 2865.726 kb on + strandat 2865.727 kb on + strandat 2866.577 kb on + strandat 2866.582 kb on + strandat 2866.650 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
remove
2,863,529 - -2.3
2,863,631 - -0.5
2,863,740 + +0.5
2,863,759 + Dsui_2707 0.21 -1.5
2,863,772 - Dsui_2707 0.23 -0.5
2,863,844 + Dsui_2707 0.31 -0.5
2,863,926 + Dsui_2707 0.40 -2.5
2,863,934 - +0.5
2,863,948 + +0.5
2,863,971 - Dsui_2707 0.45 +0.5
2,864,099 + -0.5
2,864,130 + Dsui_2707 0.62 -1.1
2,864,138 - Dsui_2707 0.63 +0.5
2,864,153 - Dsui_2707 0.65 +0.5
2,864,310 + Dsui_2707 0.82 -1.1
2,864,345 + Dsui_2707 0.86 +0.5
2,864,383 - +0.5
2,864,383 - +0.5
2,864,393 - +0.5
2,864,393 - +0.5
2,864,393 - -0.9
2,864,505 + -0.9
2,864,505 + -0.0
2,864,513 - +0.5
2,864,548 + -0.0
2,864,561 - -0.5
2,864,583 + -0.5
2,864,583 + +0.4
2,864,583 + +0.1
2,864,591 - +0.5
2,864,593 + -0.5
2,864,628 + -0.2
2,864,636 - -2.1
2,864,664 + Dsui_2708 0.11 -0.2
2,864,726 + Dsui_2708 0.17 -0.1
2,864,726 + Dsui_2708 0.17 -1.0
2,864,734 - Dsui_2708 0.17 -1.5
2,864,913 + Dsui_2708 0.32 -0.4
2,864,937 + Dsui_2708 0.34 -0.4
2,864,963 + Dsui_2708 0.36 -0.0
2,865,006 + Dsui_2708 0.40 -0.2
2,865,014 - Dsui_2708 0.40 -0.5
2,865,081 - +0.5
2,865,081 - +0.5
2,865,081 - -0.5
2,865,321 - +0.5
2,865,503 + Dsui_2708 0.81 -0.2
2,865,503 + Dsui_2708 0.81 -0.1
2,865,534 - Dsui_2708 0.83 +0.5
2,865,588 + Dsui_2708 0.88 -0.5
2,865,709 - +0.5
2,865,726 + -0.0
2,865,727 + +0.1
2,866,577 + +0.2
2,866,582 + +0.0
2,866,650 + -0.2

Or see this region's nucleotide sequence