Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2705 and Dsui_2706 are separated by 7 nucleotides Dsui_2706 and Dsui_2707 are separated by 21 nucleotides Dsui_2707 and Dsui_2708 are separated by 56 nucleotides
Dsui_2705: Dsui_2705 - permease, at 2,861,719 to 2,863,008
_2705
Dsui_2706: Dsui_2706 - adenine phosphoribosyltransferase, at 2,863,016 to 2,863,543
_2706
Dsui_2707: Dsui_2707 - putative permease, at 2,863,565 to 2,864,470
_2707
Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732
_2708
Position (kb)
2863
2864 Strain fitness (log2 ratio)
-2
-1
0
1 at 2862.036 kb on - strand at 2862.329 kb on + strand at 2862.456 kb on - strand at 2862.573 kb on + strand, within Dsui_2705 at 2862.593 kb on + strand, within Dsui_2705 at 2862.736 kb on + strand, within Dsui_2705 at 2862.765 kb on + strand, within Dsui_2705 at 2862.835 kb on - strand at 2862.948 kb on + strand at 2862.978 kb on + strand at 2863.002 kb on + strand at 2863.002 kb on + strand at 2863.002 kb on + strand at 2863.002 kb on + strand at 2863.010 kb on - strand at 2863.010 kb on - strand at 2863.010 kb on - strand at 2863.010 kb on - strand at 2863.010 kb on - strand at 2863.010 kb on - strand at 2863.013 kb on + strand at 2863.015 kb on + strand at 2863.063 kb on + strand at 2863.082 kb on - strand at 2863.097 kb on + strand, within Dsui_2706 at 2863.155 kb on + strand, within Dsui_2706 at 2863.217 kb on + strand, within Dsui_2706 at 2863.225 kb on - strand at 2863.268 kb on + strand, within Dsui_2706 at 2863.294 kb on + strand at 2863.294 kb on + strand, within Dsui_2706 at 2863.341 kb on - strand, within Dsui_2706 at 2863.483 kb on + strand, within Dsui_2706 at 2863.529 kb on - strand at 2863.631 kb on - strand at 2863.740 kb on + strand at 2863.759 kb on + strand, within Dsui_2707 at 2863.772 kb on - strand, within Dsui_2707 at 2863.844 kb on + strand, within Dsui_2707 at 2863.926 kb on + strand, within Dsui_2707 at 2863.934 kb on - strand at 2863.948 kb on + strand at 2863.971 kb on - strand, within Dsui_2707 at 2864.099 kb on + strand at 2864.130 kb on + strand, within Dsui_2707 at 2864.138 kb on - strand, within Dsui_2707 at 2864.153 kb on - strand, within Dsui_2707 at 2864.310 kb on + strand, within Dsui_2707 at 2864.345 kb on + strand, within Dsui_2707 at 2864.383 kb on - strand at 2864.383 kb on - strand at 2864.393 kb on - strand at 2864.393 kb on - strand at 2864.393 kb on - strand at 2864.505 kb on + strand at 2864.505 kb on + strand at 2864.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 2,862,036 - +0.5 2,862,329 + -1.1 2,862,456 - +0.5 2,862,573 + Dsui_2705 0.66 -1.6 2,862,593 + Dsui_2705 0.68 -0.1 2,862,736 + Dsui_2705 0.79 -2.4 2,862,765 + Dsui_2705 0.81 +0.5 2,862,835 - -0.5 2,862,948 + +0.5 2,862,978 + -1.1 2,863,002 + -0.5 2,863,002 + -0.5 2,863,002 + -0.5 2,863,002 + -1.8 2,863,010 - +0.5 2,863,010 - +0.5 2,863,010 - +0.5 2,863,010 - +0.5 2,863,010 - -0.5 2,863,010 - -0.5 2,863,013 + -2.3 2,863,015 + -1.3 2,863,063 + -1.8 2,863,082 - -0.5 2,863,097 + Dsui_2706 0.15 -1.1 2,863,155 + Dsui_2706 0.26 -1.1 2,863,217 + Dsui_2706 0.38 -1.8 2,863,225 - -1.1 2,863,268 + Dsui_2706 0.48 -0.8 2,863,294 + +0.5 2,863,294 + Dsui_2706 0.53 +0.5 2,863,341 - Dsui_2706 0.62 -1.1 2,863,483 + Dsui_2706 0.88 +0.5 2,863,529 - -2.3 2,863,631 - -0.5 2,863,740 + +0.5 2,863,759 + Dsui_2707 0.21 -1.5 2,863,772 - Dsui_2707 0.23 -0.5 2,863,844 + Dsui_2707 0.31 -0.5 2,863,926 + Dsui_2707 0.40 -2.5 2,863,934 - +0.5 2,863,948 + +0.5 2,863,971 - Dsui_2707 0.45 +0.5 2,864,099 + -0.5 2,864,130 + Dsui_2707 0.62 -1.1 2,864,138 - Dsui_2707 0.63 +0.5 2,864,153 - Dsui_2707 0.65 +0.5 2,864,310 + Dsui_2707 0.82 -1.1 2,864,345 + Dsui_2707 0.86 +0.5 2,864,383 - +0.5 2,864,383 - +0.5 2,864,393 - +0.5 2,864,393 - +0.5 2,864,393 - -0.9 2,864,505 + -0.9 2,864,505 + -0.0 2,864,513 - +0.5
Or see this region's nucleotide sequence