Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2079 and Dsui_2080 overlap by 4 nucleotides Dsui_2080 and Dsui_2081 are separated by 6 nucleotides Dsui_2081 and Dsui_2082 are separated by 116 nucleotides Dsui_2082 and Dsui_2083 are separated by 213 nucleotides
Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745
_2079
Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386
_2080
Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961
_2081
Dsui_2082: Dsui_2082 - alkylhydroperoxidase AhpD family core domain protein, at 2,203,078 to 2,203,518
_2082
Dsui_2083: Dsui_2083 - hypothetical protein, at 2,203,732 to 2,204,022
_2083
Position (kb)
2201
2202
2203 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2200.495 kb on - strand, within Dsui_2079 at 2200.541 kb on + strand, within Dsui_2079 at 2200.546 kb on + strand at 2200.554 kb on + strand, within Dsui_2079 at 2200.606 kb on + strand at 2200.608 kb on - strand at 2200.681 kb on + strand at 2200.692 kb on + strand at 2200.814 kb on - strand at 2200.827 kb on - strand at 2200.827 kb on - strand, within Dsui_2080 at 2200.841 kb on + strand, within Dsui_2080 at 2200.971 kb on - strand, within Dsui_2080 at 2201.044 kb on + strand, within Dsui_2080 at 2201.081 kb on + strand, within Dsui_2080 at 2201.109 kb on - strand at 2201.228 kb on + strand at 2201.293 kb on - strand, within Dsui_2080 at 2201.687 kb on - strand, within Dsui_2081 at 2201.692 kb on - strand, within Dsui_2081 at 2201.735 kb on - strand, within Dsui_2081 at 2201.806 kb on + strand at 2201.872 kb on + strand, within Dsui_2081 at 2201.916 kb on - strand at 2201.997 kb on + strand, within Dsui_2081 at 2202.071 kb on + strand at 2202.083 kb on + strand at 2202.083 kb on + strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.223 kb on + strand at 2202.231 kb on - strand, within Dsui_2081 at 2202.255 kb on + strand, within Dsui_2081 at 2202.290 kb on + strand at 2202.319 kb on - strand, within Dsui_2081 at 2202.342 kb on - strand, within Dsui_2081 at 2202.354 kb on + strand, within Dsui_2081 at 2202.502 kb on + strand at 2202.507 kb on + strand at 2202.526 kb on + strand at 2202.528 kb on + strand at 2202.529 kb on - strand, within Dsui_2081 at 2202.566 kb on + strand at 2202.906 kb on + strand at 2202.946 kb on - strand at 2203.009 kb on + strand at 2203.060 kb on + strand at 2203.163 kb on + strand at 2203.163 kb on + strand, within Dsui_2082 at 2203.163 kb on + strand, within Dsui_2082 at 2203.186 kb on + strand, within Dsui_2082 at 2203.259 kb on + strand, within Dsui_2082 at 2203.339 kb on + strand, within Dsui_2082 at 2203.339 kb on + strand, within Dsui_2082 at 2203.344 kb on + strand, within Dsui_2082 at 2203.344 kb on + strand at 2203.347 kb on - strand at 2203.352 kb on - strand at 2203.397 kb on + strand, within Dsui_2082 at 2203.407 kb on + strand, within Dsui_2082 at 2203.407 kb on + strand, within Dsui_2082 at 2203.414 kb on + strand, within Dsui_2082 at 2203.419 kb on + strand, within Dsui_2082 at 2203.442 kb on + strand, within Dsui_2082 at 2203.442 kb on + strand, within Dsui_2082 at 2203.442 kb on + strand, within Dsui_2082 at 2203.442 kb on + strand, within Dsui_2082 at 2203.442 kb on + strand, within Dsui_2082 at 2203.482 kb on + strand at 2203.507 kb on + strand at 2203.512 kb on + strand at 2203.518 kb on + strand at 2203.545 kb on + strand at 2203.545 kb on + strand at 2203.545 kb on + strand at 2203.546 kb on + strand at 2203.553 kb on - strand at 2203.553 kb on - strand at 2203.553 kb on - strand at 2203.554 kb on - strand at 2203.554 kb on - strand at 2203.565 kb on - strand at 2203.579 kb on + strand at 2203.586 kb on + strand at 2203.594 kb on - strand at 2203.597 kb on - strand at 2203.605 kb on - strand at 2203.619 kb on + strand at 2203.619 kb on + strand at 2203.619 kb on + strand at 2203.620 kb on - strand at 2203.621 kb on + strand at 2203.622 kb on - strand at 2203.624 kb on + strand at 2203.624 kb on + strand at 2203.627 kb on - strand at 2203.632 kb on - strand at 2203.650 kb on + strand at 2203.650 kb on + strand at 2203.655 kb on - strand at 2203.660 kb on + strand at 2203.677 kb on - strand at 2203.683 kb on - strand at 2203.688 kb on + strand at 2203.702 kb on + strand at 2203.717 kb on - strand at 2203.717 kb on - strand at 2203.730 kb on + strand at 2203.731 kb on - strand at 2203.733 kb on - strand at 2203.738 kb on - strand at 2203.738 kb on - strand at 2203.739 kb on - strand at 2203.739 kb on - strand at 2203.739 kb on - strand at 2203.756 kb on - strand at 2203.775 kb on + strand at 2203.776 kb on - strand, within Dsui_2083 at 2203.776 kb on - strand, within Dsui_2083 at 2203.776 kb on - strand, within Dsui_2083 at 2203.783 kb on - strand at 2203.786 kb on + strand at 2203.791 kb on + strand at 2203.791 kb on - strand at 2203.794 kb on - strand, within Dsui_2083 at 2203.800 kb on - strand at 2203.805 kb on + strand, within Dsui_2083 at 2203.808 kb on - strand, within Dsui_2083 at 2203.810 kb on + strand at 2203.815 kb on + strand, within Dsui_2083 at 2203.825 kb on - strand, within Dsui_2083 at 2203.841 kb on + strand at 2203.842 kb on - strand at 2203.849 kb on - strand, within Dsui_2083 at 2203.851 kb on + strand at 2203.851 kb on + strand, within Dsui_2083 at 2203.873 kb on + strand at 2203.873 kb on + strand at 2203.890 kb on - strand at 2203.898 kb on - strand at 2203.905 kb on + strand at 2203.915 kb on + strand at 2203.928 kb on + strand at 2203.933 kb on + strand, within Dsui_2083 at 2203.933 kb on + strand at 2203.945 kb on + strand, within Dsui_2083 at 2203.950 kb on + strand, within Dsui_2083 at 2203.950 kb on + strand at 2203.956 kb on + strand, within Dsui_2083
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 2,200,495 - Dsui_2079 0.86 -1.8 2,200,541 + Dsui_2079 0.89 -0.2 2,200,546 + +0.8 2,200,554 + Dsui_2079 0.90 +0.8 2,200,606 + +0.8 2,200,608 - +0.8 2,200,681 + -0.2 2,200,692 + -0.2 2,200,814 - -0.8 2,200,827 - -0.2 2,200,827 - Dsui_2080 0.13 -0.2 2,200,841 + Dsui_2080 0.15 -0.2 2,200,971 - Dsui_2080 0.36 -2.7 2,201,044 + Dsui_2080 0.47 -0.2 2,201,081 + Dsui_2080 0.53 +0.8 2,201,109 - +0.8 2,201,228 + +0.8 2,201,293 - Dsui_2080 0.85 -0.2 2,201,687 - Dsui_2081 0.19 +0.8 2,201,692 - Dsui_2081 0.19 +0.2 2,201,735 - Dsui_2081 0.22 -1.8 2,201,806 + -1.2 2,201,872 + Dsui_2081 0.31 -0.8 2,201,916 - +0.8 2,201,997 + Dsui_2081 0.38 -0.2 2,202,071 + -0.2 2,202,083 + -0.8 2,202,083 + Dsui_2081 0.44 -1.2 2,202,191 - Dsui_2081 0.51 +0.8 2,202,191 - Dsui_2081 0.51 -0.8 2,202,223 + +0.8 2,202,231 - Dsui_2081 0.53 -2.8 2,202,255 + Dsui_2081 0.55 -1.8 2,202,290 + +0.8 2,202,319 - Dsui_2081 0.59 -2.0 2,202,342 - Dsui_2081 0.60 -1.5 2,202,354 + Dsui_2081 0.61 -2.0 2,202,502 + -0.2 2,202,507 + +0.8 2,202,526 + +0.8 2,202,528 + -1.2 2,202,529 - Dsui_2081 0.72 -2.5 2,202,566 + -0.2 2,202,906 + -0.8 2,202,946 - -2.5 2,203,009 + -0.8 2,203,060 + -0.8 2,203,163 + +0.8 2,203,163 + Dsui_2082 0.19 -1.2 2,203,163 + Dsui_2082 0.19 -0.2 2,203,186 + Dsui_2082 0.24 +0.8 2,203,259 + Dsui_2082 0.41 -2.0 2,203,339 + Dsui_2082 0.59 -0.2 2,203,339 + Dsui_2082 0.59 +0.8 2,203,344 + Dsui_2082 0.60 -0.8 2,203,344 + +0.8 2,203,347 - -0.2 2,203,352 - +0.8 2,203,397 + Dsui_2082 0.72 -1.2 2,203,407 + Dsui_2082 0.75 +0.8 2,203,407 + Dsui_2082 0.75 -0.2 2,203,414 + Dsui_2082 0.76 +0.8 2,203,419 + Dsui_2082 0.77 -1.8 2,203,442 + Dsui_2082 0.83 -1.5 2,203,442 + Dsui_2082 0.83 -0.2 2,203,442 + Dsui_2082 0.83 -0.2 2,203,442 + Dsui_2082 0.83 -0.8 2,203,442 + Dsui_2082 0.83 +0.8 2,203,482 + -0.8 2,203,507 + -1.2 2,203,512 + +0.8 2,203,518 + -0.8 2,203,545 + +0.8 2,203,545 + +0.8 2,203,545 + +0.8 2,203,546 + -1.5 2,203,553 - -0.2 2,203,553 - -0.2 2,203,553 - +0.8 2,203,554 - -1.2 2,203,554 - +0.8 2,203,565 - -2.0 2,203,579 + +0.8 2,203,586 + +0.8 2,203,594 - -0.8 2,203,597 - +0.8 2,203,605 - -1.2 2,203,619 + -0.2 2,203,619 + +0.8 2,203,619 + +0.8 2,203,620 - -0.2 2,203,621 + +0.8 2,203,622 - +0.8 2,203,624 + -0.8 2,203,624 + +0.8 2,203,627 - +0.8 2,203,632 - +0.8 2,203,650 + +0.8 2,203,650 + -0.2 2,203,655 - +0.8 2,203,660 + -0.2 2,203,677 - +0.8 2,203,683 - -0.2 2,203,688 + +0.8 2,203,702 + +0.8 2,203,717 - +0.8 2,203,717 - -0.2 2,203,730 + -0.8 2,203,731 - -0.2 2,203,733 - -0.2 2,203,738 - -0.8 2,203,738 - -1.2 2,203,739 - +0.8 2,203,739 - -0.2 2,203,739 - -0.8 2,203,756 - -0.2 2,203,775 + -0.2 2,203,776 - Dsui_2083 0.15 +0.4 2,203,776 - Dsui_2083 0.15 -0.4 2,203,776 - Dsui_2083 0.15 +0.7 2,203,783 - +0.8 2,203,786 + -0.2 2,203,791 + +0.8 2,203,791 - +0.8 2,203,794 - Dsui_2083 0.21 -0.2 2,203,800 - +0.8 2,203,805 + Dsui_2083 0.25 +0.8 2,203,808 - Dsui_2083 0.26 -0.8 2,203,810 + -0.8 2,203,815 + Dsui_2083 0.29 -1.2 2,203,825 - Dsui_2083 0.32 +0.8 2,203,841 + +0.8 2,203,842 - -0.2 2,203,849 - Dsui_2083 0.40 -0.2 2,203,851 + -1.2 2,203,851 + Dsui_2083 0.41 -0.8 2,203,873 + +0.8 2,203,873 + +0.8 2,203,890 - +0.8 2,203,898 - -0.2 2,203,905 + -0.2 2,203,915 + +0.8 2,203,928 + +0.8 2,203,933 + Dsui_2083 0.69 -0.8 2,203,933 + -0.2 2,203,945 + Dsui_2083 0.73 +0.8 2,203,950 + Dsui_2083 0.75 +0.8 2,203,950 + +0.8 2,203,956 + Dsui_2083 0.77 -0.8
Or see this region's nucleotide sequence