Strain Fitness in Dechlorosoma suillum PS around Dsui_1387

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1386 and Dsui_1387 are separated by 88 nucleotidesDsui_1387 and Dsui_1388 overlap by 4 nucleotides Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017 _1386 Dsui_1387: Dsui_1387 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,444,106 to 1,444,822 _1387 Dsui_1388: Dsui_1388 - hypothetical protein, at 1,444,819 to 1,446,975 _1388 Position (kb) 1444 1445Strain fitness (log2 ratio) -3 -2 -1 0 1at 1443.171 kb on + strand, within Dsui_1386at 1443.207 kb on + strand, within Dsui_1386at 1443.247 kb on - strand, within Dsui_1386at 1443.379 kb on + strand, within Dsui_1386at 1443.420 kb on - strand, within Dsui_1386at 1443.601 kb on - strand, within Dsui_1386at 1443.603 kb on - strandat 1443.706 kb on - strand, within Dsui_1386at 1443.718 kb on + strandat 1443.726 kb on - strand, within Dsui_1386at 1443.748 kb on - strand, within Dsui_1386at 1443.748 kb on - strand, within Dsui_1386at 1443.764 kb on + strand, within Dsui_1386at 1443.764 kb on - strand, within Dsui_1386at 1443.772 kb on - strand, within Dsui_1386at 1443.772 kb on - strand, within Dsui_1386at 1443.889 kb on + strandat 1443.891 kb on + strandat 1443.902 kb on + strandat 1443.915 kb on - strandat 1444.050 kb on + strandat 1444.338 kb on - strand, within Dsui_1387at 1444.350 kb on - strand, within Dsui_1387at 1444.378 kb on + strandat 1444.428 kb on - strand, within Dsui_1387at 1444.501 kb on + strand, within Dsui_1387at 1444.501 kb on + strandat 1444.509 kb on - strand, within Dsui_1387at 1444.509 kb on - strand, within Dsui_1387at 1444.585 kb on - strand, within Dsui_1387at 1444.646 kb on + strand, within Dsui_1387at 1444.794 kb on - strandat 1444.818 kb on - strandat 1444.862 kb on - strandat 1444.950 kb on + strandat 1445.063 kb on + strand, within Dsui_1388at 1445.147 kb on - strandat 1445.246 kb on + strand, within Dsui_1388at 1445.259 kb on - strand, within Dsui_1388at 1445.698 kb on + strandat 1445.709 kb on + strandat 1445.717 kb on - strandat 1445.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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1,443,171 + Dsui_1386 0.36 +0.4
1,443,207 + Dsui_1386 0.38 +0.4
1,443,247 - Dsui_1386 0.41 -0.1
1,443,379 + Dsui_1386 0.51 +0.4
1,443,420 - Dsui_1386 0.55 -0.6
1,443,601 - Dsui_1386 0.68 +0.4
1,443,603 - -2.2
1,443,706 - Dsui_1386 0.76 +0.8
1,443,718 + +0.4
1,443,726 - Dsui_1386 0.78 -0.3
1,443,748 - Dsui_1386 0.79 -0.7
1,443,748 - Dsui_1386 0.79 -0.3
1,443,764 + Dsui_1386 0.81 +0.4
1,443,764 - Dsui_1386 0.81 -1.4
1,443,772 - Dsui_1386 0.81 +1.0
1,443,772 - Dsui_1386 0.81 -2.1
1,443,889 + -2.6
1,443,891 + +0.4
1,443,902 + -1.6
1,443,915 - -1.5
1,444,050 + +0.4
1,444,338 - Dsui_1387 0.32 +0.4
1,444,350 - Dsui_1387 0.34 -0.6
1,444,378 + -0.6
1,444,428 - Dsui_1387 0.45 -2.4
1,444,501 + Dsui_1387 0.55 -1.6
1,444,501 + +0.4
1,444,509 - Dsui_1387 0.56 -0.6
1,444,509 - Dsui_1387 0.56 -0.6
1,444,585 - Dsui_1387 0.67 +0.4
1,444,646 + Dsui_1387 0.75 +0.4
1,444,794 - -1.6
1,444,818 - -2.9
1,444,862 - -1.2
1,444,950 + +0.4
1,445,063 + Dsui_1388 0.11 -1.6
1,445,147 - -0.6
1,445,246 + Dsui_1388 0.20 -1.2
1,445,259 - Dsui_1388 0.20 -0.6
1,445,698 + +0.4
1,445,709 + -1.2
1,445,717 - +0.4
1,445,790 + +0.4

Or see this region's nucleotide sequence