Strain Fitness in Dechlorosoma suillum PS around Dsui_1068

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1067 and Dsui_1068 overlap by 4 nucleotidesDsui_1068 and Dsui_1069 are separated by 98 nucleotidesDsui_1069 and Dsui_1070 are separated by 111 nucleotides Dsui_1067: Dsui_1067 - heavy metal sensor kinase, at 1,101,071 to 1,102,438 _1067 Dsui_1068: Dsui_1068 - heavy metal response regulator, at 1,102,435 to 1,103,112 _1068 Dsui_1069: Dsui_1069 - Cytochrome c, at 1,103,211 to 1,103,885 _1069 Dsui_1070: Dsui_1070 - putative metal-binding protein, at 1,103,997 to 1,104,416 _1070 Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1at 1101.437 kb on - strand, within Dsui_1067at 1101.450 kb on - strand, within Dsui_1067at 1101.450 kb on - strand, within Dsui_1067at 1101.452 kb on + strand, within Dsui_1067at 1101.452 kb on - strand, within Dsui_1067at 1101.460 kb on - strand, within Dsui_1067at 1101.461 kb on + strand, within Dsui_1067at 1101.461 kb on + strand, within Dsui_1067at 1101.476 kb on - strand, within Dsui_1067at 1101.495 kb on - strand, within Dsui_1067at 1101.507 kb on - strand, within Dsui_1067at 1101.543 kb on + strand, within Dsui_1067at 1101.563 kb on + strand, within Dsui_1067at 1101.598 kb on - strand, within Dsui_1067at 1101.612 kb on + strand, within Dsui_1067at 1101.632 kb on + strand, within Dsui_1067at 1101.632 kb on + strand, within Dsui_1067at 1101.635 kb on - strand, within Dsui_1067at 1101.640 kb on - strand, within Dsui_1067at 1101.648 kb on + strand, within Dsui_1067at 1101.656 kb on - strand, within Dsui_1067at 1101.656 kb on - strand, within Dsui_1067at 1101.681 kb on - strand, within Dsui_1067at 1101.683 kb on - strand, within Dsui_1067at 1101.691 kb on - strand, within Dsui_1067at 1101.701 kb on + strand, within Dsui_1067at 1101.701 kb on + strand, within Dsui_1067at 1101.701 kb on - strand, within Dsui_1067at 1101.751 kb on + strand, within Dsui_1067at 1101.759 kb on - strand, within Dsui_1067at 1101.814 kb on + strand, within Dsui_1067at 1101.841 kb on + strand, within Dsui_1067at 1101.846 kb on + strand, within Dsui_1067at 1101.846 kb on + strand, within Dsui_1067at 1101.851 kb on + strand, within Dsui_1067at 1101.954 kb on + strand, within Dsui_1067at 1101.962 kb on - strand, within Dsui_1067at 1102.012 kb on + strand, within Dsui_1067at 1102.033 kb on + strand, within Dsui_1067at 1102.086 kb on + strand, within Dsui_1067at 1102.086 kb on + strand, within Dsui_1067at 1102.088 kb on - strand, within Dsui_1067at 1102.094 kb on - strand, within Dsui_1067at 1102.098 kb on + strand, within Dsui_1067at 1102.098 kb on + strand, within Dsui_1067at 1102.098 kb on + strandat 1102.098 kb on + strand, within Dsui_1067at 1102.098 kb on + strand, within Dsui_1067at 1102.098 kb on + strand, within Dsui_1067at 1102.098 kb on + strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.106 kb on - strand, within Dsui_1067at 1102.113 kb on + strand, within Dsui_1067at 1102.113 kb on + strand, within Dsui_1067at 1102.113 kb on - strand, within Dsui_1067at 1102.206 kb on + strand, within Dsui_1067at 1102.210 kb on - strand, within Dsui_1067at 1102.235 kb on + strand, within Dsui_1067at 1102.286 kb on - strand, within Dsui_1067at 1102.341 kb on - strandat 1102.341 kb on - strandat 1102.351 kb on + strandat 1102.351 kb on + strandat 1102.352 kb on + strandat 1102.366 kb on + strandat 1102.374 kb on - strandat 1102.396 kb on + strandat 1102.410 kb on - strandat 1102.416 kb on - strandat 1102.426 kb on - strandat 1102.432 kb on - strandat 1102.459 kb on + strandat 1102.473 kb on - strandat 1102.483 kb on - strandat 1102.483 kb on - strandat 1102.491 kb on + strandat 1102.493 kb on - strandat 1102.571 kb on + strand, within Dsui_1068at 1102.578 kb on + strand, within Dsui_1068at 1102.584 kb on - strand, within Dsui_1068at 1102.595 kb on + strand, within Dsui_1068at 1102.600 kb on + strand, within Dsui_1068at 1102.600 kb on + strand, within Dsui_1068at 1102.608 kb on - strand, within Dsui_1068at 1102.608 kb on - strand, within Dsui_1068at 1102.662 kb on + strand, within Dsui_1068at 1102.683 kb on + strand, within Dsui_1068at 1102.690 kb on - strand, within Dsui_1068at 1102.733 kb on + strandat 1102.752 kb on + strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.757 kb on - strand, within Dsui_1068at 1102.760 kb on - strand, within Dsui_1068at 1102.762 kb on + strand, within Dsui_1068at 1102.801 kb on + strand, within Dsui_1068at 1102.811 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.836 kb on + strand, within Dsui_1068at 1102.844 kb on + strand, within Dsui_1068at 1102.844 kb on + strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.844 kb on - strand, within Dsui_1068at 1102.852 kb on - strand, within Dsui_1068at 1102.867 kb on + strand, within Dsui_1068at 1102.895 kb on - strand, within Dsui_1068at 1102.959 kb on + strand, within Dsui_1068at 1102.990 kb on - strand, within Dsui_1068at 1103.001 kb on - strand, within Dsui_1068at 1103.006 kb on - strand, within Dsui_1068at 1103.006 kb on - strand, within Dsui_1068at 1103.015 kb on - strand, within Dsui_1068at 1103.029 kb on + strand, within Dsui_1068at 1103.042 kb on - strand, within Dsui_1068at 1103.065 kb on - strandat 1103.065 kb on - strandat 1103.107 kb on - strandat 1103.115 kb on - strandat 1103.115 kb on - strandat 1103.129 kb on - strandat 1103.192 kb on - strandat 1103.201 kb on + strandat 1103.274 kb on - strandat 1103.328 kb on + strand, within Dsui_1069at 1103.329 kb on + strand, within Dsui_1069at 1103.337 kb on - strand, within Dsui_1069at 1103.355 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strandat 1103.423 kb on + strand, within Dsui_1069at 1103.423 kb on + strand, within Dsui_1069at 1103.431 kb on + strandat 1103.438 kb on - strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.448 kb on + strand, within Dsui_1069at 1103.453 kb on + strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.456 kb on - strand, within Dsui_1069at 1103.458 kb on + strand, within Dsui_1069at 1103.461 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.466 kb on - strand, within Dsui_1069at 1103.519 kb on + strand, within Dsui_1069at 1103.553 kb on + strand, within Dsui_1069at 1103.562 kb on - strand, within Dsui_1069at 1103.562 kb on - strand, within Dsui_1069at 1103.599 kb on + strand, within Dsui_1069at 1103.627 kb on + strand, within Dsui_1069at 1103.654 kb on + strand, within Dsui_1069at 1103.660 kb on + strand, within Dsui_1069at 1103.663 kb on - strand, within Dsui_1069at 1103.663 kb on - strand, within Dsui_1069at 1103.675 kb on + strand, within Dsui_1069at 1103.737 kb on - strand, within Dsui_1069at 1103.850 kb on + strandat 1103.860 kb on + strandat 1103.868 kb on - strandat 1103.868 kb on - strandat 1103.923 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1103.975 kb on - strandat 1104.054 kb on - strand, within Dsui_1070at 1104.054 kb on - strand, within Dsui_1070at 1104.065 kb on + strand, within Dsui_1070at 1104.073 kb on - strand, within Dsui_1070at 1104.088 kb on + strand, within Dsui_1070at 1104.096 kb on - strand, within Dsui_1070at 1104.100 kb on + strand, within Dsui_1070

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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1,101,437 - Dsui_1067 0.27 +0.6
1,101,450 - Dsui_1067 0.28 -2.0
1,101,450 - Dsui_1067 0.28 -0.0
1,101,452 + Dsui_1067 0.28 +0.6
1,101,452 - Dsui_1067 0.28 -1.4
1,101,460 - Dsui_1067 0.28 -0.4
1,101,461 + Dsui_1067 0.29 +0.6
1,101,461 + Dsui_1067 0.29 -0.4
1,101,476 - Dsui_1067 0.30 -0.4
1,101,495 - Dsui_1067 0.31 +0.6
1,101,507 - Dsui_1067 0.32 +0.6
1,101,543 + Dsui_1067 0.35 -1.0
1,101,563 + Dsui_1067 0.36 +0.6
1,101,598 - Dsui_1067 0.39 -2.0
1,101,612 + Dsui_1067 0.40 +0.6
1,101,632 + Dsui_1067 0.41 -1.7
1,101,632 + Dsui_1067 0.41 +0.6
1,101,635 - Dsui_1067 0.41 -0.4
1,101,640 - Dsui_1067 0.42 +0.6
1,101,648 + Dsui_1067 0.42 +0.6
1,101,656 - Dsui_1067 0.43 +0.6
1,101,656 - Dsui_1067 0.43 +0.6
1,101,681 - Dsui_1067 0.45 -1.4
1,101,683 - Dsui_1067 0.45 -0.4
1,101,691 - Dsui_1067 0.45 -0.4
1,101,701 + Dsui_1067 0.46 +0.6
1,101,701 + Dsui_1067 0.46 +0.6
1,101,701 - Dsui_1067 0.46 -1.4
1,101,751 + Dsui_1067 0.50 -1.4
1,101,759 - Dsui_1067 0.50 -1.4
1,101,814 + Dsui_1067 0.54 +0.6
1,101,841 + Dsui_1067 0.56 +0.6
1,101,846 + Dsui_1067 0.57 -0.4
1,101,846 + Dsui_1067 0.57 +0.6
1,101,851 + Dsui_1067 0.57 +0.6
1,101,954 + Dsui_1067 0.65 -0.4
1,101,962 - Dsui_1067 0.65 -1.0
1,102,012 + Dsui_1067 0.69 -1.0
1,102,033 + Dsui_1067 0.70 +0.6
1,102,086 + Dsui_1067 0.74 +0.6
1,102,086 + Dsui_1067 0.74 -0.4
1,102,088 - Dsui_1067 0.74 -0.4
1,102,094 - Dsui_1067 0.75 +0.6
1,102,098 + Dsui_1067 0.75 -1.0
1,102,098 + Dsui_1067 0.75 +0.6
1,102,098 + +0.6
1,102,098 + Dsui_1067 0.75 -1.4
1,102,098 + Dsui_1067 0.75 -1.0
1,102,098 + Dsui_1067 0.75 +0.6
1,102,098 + Dsui_1067 0.75 -2.0
1,102,106 - Dsui_1067 0.76 -1.4
1,102,106 - Dsui_1067 0.76 -0.4
1,102,106 - Dsui_1067 0.76 +1.6
1,102,106 - Dsui_1067 0.76 -2.1
1,102,106 - Dsui_1067 0.76 -1.7
1,102,106 - Dsui_1067 0.76 -1.0
1,102,106 - Dsui_1067 0.76 -1.0
1,102,113 + Dsui_1067 0.76 +0.6
1,102,113 + Dsui_1067 0.76 +0.6
1,102,113 - Dsui_1067 0.76 -0.4
1,102,206 + Dsui_1067 0.83 +0.6
1,102,210 - Dsui_1067 0.83 -1.7
1,102,235 + Dsui_1067 0.85 -0.4
1,102,286 - Dsui_1067 0.89 -0.4
1,102,341 - -1.0
1,102,341 - +0.6
1,102,351 + +0.6
1,102,351 + -0.4
1,102,352 + -1.0
1,102,366 + -1.4
1,102,374 - +0.6
1,102,396 + +0.6
1,102,410 - +0.6
1,102,416 - +0.6
1,102,426 - +0.6
1,102,432 - -0.4
1,102,459 + -1.0
1,102,473 - -3.2
1,102,483 - +0.6
1,102,483 - +0.6
1,102,491 + +0.6
1,102,493 - -0.4
1,102,571 + Dsui_1068 0.20 +0.6
1,102,578 + Dsui_1068 0.21 +0.6
1,102,584 - Dsui_1068 0.22 -0.4
1,102,595 + Dsui_1068 0.24 -1.0
1,102,600 + Dsui_1068 0.24 -1.0
1,102,600 + Dsui_1068 0.24 +0.6
1,102,608 - Dsui_1068 0.26 -0.4
1,102,608 - Dsui_1068 0.26 -1.4
1,102,662 + Dsui_1068 0.33 +0.6
1,102,683 + Dsui_1068 0.37 +0.6
1,102,690 - Dsui_1068 0.38 +0.6
1,102,733 + +0.6
1,102,752 + Dsui_1068 0.47 +0.6
1,102,757 - Dsui_1068 0.47 -0.4
1,102,757 - Dsui_1068 0.47 -1.0
1,102,757 - Dsui_1068 0.47 -1.4
1,102,757 - Dsui_1068 0.47 +0.6
1,102,757 - Dsui_1068 0.47 -1.4
1,102,760 - Dsui_1068 0.48 -0.3
1,102,762 + Dsui_1068 0.48 -2.4
1,102,801 + Dsui_1068 0.54 +0.6
1,102,811 + Dsui_1068 0.55 -0.4
1,102,836 + Dsui_1068 0.59 +0.6
1,102,836 + Dsui_1068 0.59 +0.6
1,102,836 + Dsui_1068 0.59 +0.6
1,102,844 + Dsui_1068 0.60 -2.6
1,102,844 + Dsui_1068 0.60 -1.0
1,102,844 - Dsui_1068 0.60 -1.4
1,102,844 - Dsui_1068 0.60 -1.0
1,102,844 - Dsui_1068 0.60 -0.4
1,102,844 - Dsui_1068 0.60 +0.6
1,102,852 - Dsui_1068 0.62 -0.4
1,102,867 + Dsui_1068 0.64 -1.4
1,102,895 - Dsui_1068 0.68 -0.4
1,102,959 + Dsui_1068 0.77 -1.7
1,102,990 - Dsui_1068 0.82 -2.0
1,103,001 - Dsui_1068 0.83 -3.0
1,103,006 - Dsui_1068 0.84 -1.7
1,103,006 - Dsui_1068 0.84 +0.6
1,103,015 - Dsui_1068 0.86 -1.7
1,103,029 + Dsui_1068 0.88 +0.6
1,103,042 - Dsui_1068 0.90 +0.6
1,103,065 - +0.6
1,103,065 - -1.0
1,103,107 - -2.4
1,103,115 - -1.0
1,103,115 - +0.6
1,103,129 - -0.4
1,103,192 - +0.6
1,103,201 + -0.4
1,103,274 - +0.6
1,103,328 + Dsui_1069 0.17 +0.6
1,103,329 + Dsui_1069 0.17 -0.4
1,103,337 - Dsui_1069 0.19 +0.6
1,103,355 + Dsui_1069 0.21 +0.6
1,103,423 + Dsui_1069 0.31 -1.0
1,103,423 + Dsui_1069 0.31 +0.6
1,103,423 + +0.6
1,103,423 + Dsui_1069 0.31 +0.6
1,103,423 + Dsui_1069 0.31 -0.4
1,103,431 + +0.6
1,103,438 - Dsui_1069 0.34 -0.4
1,103,448 + Dsui_1069 0.35 +0.6
1,103,448 + Dsui_1069 0.35 +0.6
1,103,448 + Dsui_1069 0.35 +0.6
1,103,453 + Dsui_1069 0.36 -1.0
1,103,456 - Dsui_1069 0.36 +0.6
1,103,456 - Dsui_1069 0.36 +0.6
1,103,456 - Dsui_1069 0.36 +0.6
1,103,456 - Dsui_1069 0.36 -0.4
1,103,456 - Dsui_1069 0.36 -0.4
1,103,458 + Dsui_1069 0.37 +0.6
1,103,461 - Dsui_1069 0.37 -1.0
1,103,466 - Dsui_1069 0.38 -1.4
1,103,466 - Dsui_1069 0.38 -0.4
1,103,466 - Dsui_1069 0.38 -1.2
1,103,519 + Dsui_1069 0.46 -0.4
1,103,553 + Dsui_1069 0.51 +0.6
1,103,562 - Dsui_1069 0.52 +0.6
1,103,562 - Dsui_1069 0.52 +0.6
1,103,599 + Dsui_1069 0.57 +0.6
1,103,627 + Dsui_1069 0.62 -0.4
1,103,654 + Dsui_1069 0.66 -1.4
1,103,660 + Dsui_1069 0.67 -0.4
1,103,663 - Dsui_1069 0.67 +0.6
1,103,663 - Dsui_1069 0.67 -2.9
1,103,675 + Dsui_1069 0.69 -2.0
1,103,737 - Dsui_1069 0.78 +0.6
1,103,850 + +0.6
1,103,860 + -1.0
1,103,868 - +0.6
1,103,868 - +0.6
1,103,923 - +0.6
1,103,975 - -0.4
1,103,975 - -1.0
1,103,975 - -1.0
1,103,975 - -2.7
1,104,054 - Dsui_1070 0.14 -1.4
1,104,054 - Dsui_1070 0.14 -0.4
1,104,065 + Dsui_1070 0.16 +0.6
1,104,073 - Dsui_1070 0.18 -0.4
1,104,088 + Dsui_1070 0.22 +0.6
1,104,096 - Dsui_1070 0.24 +0.6
1,104,100 + Dsui_1070 0.25 -0.4

Or see this region's nucleotide sequence