Strain Fitness in Dechlorosoma suillum PS around Dsui_0850

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0849 and Dsui_0850 are separated by 274 nucleotidesDsui_0850 and Dsui_0851 are separated by 73 nucleotides Dsui_0849: Dsui_0849 - ParB-like partition protein, at 866,564 to 867,397 _0849 Dsui_0850: Dsui_0850 - hypothetical protein, at 867,672 to 867,947 _0850 Dsui_0851: Dsui_0851 - F0F1-type ATP synthase, alpha subunit, at 868,021 to 868,896 _0851 Position (kb) 867 868Strain fitness (log2 ratio) -2 -1 0 1at 867.531 kb on + strandat 867.539 kb on - strandat 867.548 kb on + strandat 867.641 kb on + strandat 867.644 kb on + strandat 867.716 kb on + strand, within Dsui_0850at 867.721 kb on + strand, within Dsui_0850at 867.721 kb on + strand, within Dsui_0850at 867.726 kb on + strand, within Dsui_0850at 867.773 kb on + strand, within Dsui_0850at 867.776 kb on + strand, within Dsui_0850at 867.884 kb on + strand, within Dsui_0850at 867.929 kb on + strandat 867.929 kb on + strandat 867.929 kb on + strandat 867.929 kb on + strandat 867.952 kb on + strandat 867.967 kb on + strandat 867.967 kb on + strandat 868.887 kb on + strandat 868.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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867,531 + -0.3
867,539 - -0.5
867,548 + -0.5
867,641 + -0.1
867,644 + +0.2
867,716 + Dsui_0850 0.16 -2.0
867,721 + Dsui_0850 0.18 -0.8
867,721 + Dsui_0850 0.18 -1.1
867,726 + Dsui_0850 0.20 -0.7
867,773 + Dsui_0850 0.37 -1.4
867,776 + Dsui_0850 0.38 -1.1
867,884 + Dsui_0850 0.77 -0.7
867,929 + -1.5
867,929 + -0.6
867,929 + -0.6
867,929 + -0.7
867,952 + -0.8
867,967 + -0.6
867,967 + -1.3
868,887 + -1.1
868,913 + -0.3

Or see this region's nucleotide sequence