Strain Fitness in Dechlorosoma suillum PS around Dsui_0758

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0757 and Dsui_0758 are separated by 142 nucleotidesDsui_0758 and Dsui_0759 are separated by 63 nucleotidesDsui_0759 and Dsui_0760 are separated by 7 nucleotides Dsui_0757: Dsui_0757 - HD-GYP domain-containing protein, at 755,985 to 757,190 _0757 Dsui_0758: Dsui_0758 - ATPase component of ABC transporters with duplicated ATPase domain, at 757,333 to 759,237 _0758 Dsui_0759: Dsui_0759 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 759,301 to 760,137 _0759 Dsui_0760: Dsui_0760 - diguanylate cyclase (GGDEF) domain-containing protein, at 760,145 to 762,571 _0760 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 756.359 kb on - strand, within Dsui_0757at 756.384 kb on + strand, within Dsui_0757at 756.394 kb on + strand, within Dsui_0757at 756.438 kb on - strand, within Dsui_0757at 756.452 kb on + strandat 756.462 kb on + strandat 756.481 kb on - strand, within Dsui_0757at 756.509 kb on - strand, within Dsui_0757at 756.574 kb on - strand, within Dsui_0757at 756.589 kb on - strand, within Dsui_0757at 756.607 kb on + strand, within Dsui_0757at 756.626 kb on + strand, within Dsui_0757at 756.634 kb on - strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.647 kb on + strand, within Dsui_0757at 756.655 kb on - strand, within Dsui_0757at 756.706 kb on + strand, within Dsui_0757at 756.706 kb on + strand, within Dsui_0757at 756.711 kb on + strand, within Dsui_0757at 756.801 kb on - strandat 756.908 kb on + strand, within Dsui_0757at 756.996 kb on + strand, within Dsui_0757at 757.007 kb on + strandat 757.007 kb on + strand, within Dsui_0757at 757.015 kb on - strand, within Dsui_0757at 757.061 kb on - strand, within Dsui_0757at 757.063 kb on - strand, within Dsui_0757at 757.070 kb on + strandat 757.083 kb on - strandat 757.137 kb on - strandat 757.198 kb on + strandat 757.198 kb on + strandat 757.206 kb on - strandat 757.211 kb on - strandat 757.215 kb on - strandat 757.217 kb on + strandat 757.330 kb on + strandat 757.420 kb on - strandat 757.517 kb on - strandat 757.603 kb on - strand, within Dsui_0758at 757.607 kb on + strand, within Dsui_0758at 757.631 kb on - strand, within Dsui_0758at 757.710 kb on + strand, within Dsui_0758at 757.736 kb on + strand, within Dsui_0758at 757.776 kb on + strand, within Dsui_0758at 757.807 kb on + strand, within Dsui_0758at 757.840 kb on - strand, within Dsui_0758at 757.876 kb on - strandat 757.973 kb on + strand, within Dsui_0758at 757.981 kb on - strand, within Dsui_0758at 757.995 kb on + strand, within Dsui_0758at 758.007 kb on + strand, within Dsui_0758at 758.007 kb on + strand, within Dsui_0758at 758.068 kb on - strand, within Dsui_0758at 758.176 kb on + strand, within Dsui_0758at 758.312 kb on + strand, within Dsui_0758at 758.315 kb on - strand, within Dsui_0758at 758.392 kb on - strand, within Dsui_0758at 758.430 kb on - strand, within Dsui_0758at 758.621 kb on - strandat 758.658 kb on - strandat 758.768 kb on + strand, within Dsui_0758at 758.827 kb on - strand, within Dsui_0758at 758.890 kb on + strand, within Dsui_0758at 758.921 kb on + strand, within Dsui_0758at 758.929 kb on - strandat 759.040 kb on + strand, within Dsui_0758at 759.094 kb on - strandat 759.110 kb on + strandat 759.167 kb on - strandat 759.207 kb on - strandat 759.268 kb on + strandat 759.294 kb on - strandat 759.380 kb on - strandat 759.387 kb on + strand, within Dsui_0759at 759.418 kb on - strand, within Dsui_0759at 759.428 kb on + strand, within Dsui_0759at 759.454 kb on - strand, within Dsui_0759at 759.471 kb on - strand, within Dsui_0759at 759.509 kb on + strand, within Dsui_0759at 759.516 kb on - strand, within Dsui_0759at 759.565 kb on - strand, within Dsui_0759at 759.607 kb on - strand, within Dsui_0759at 759.665 kb on - strand, within Dsui_0759at 759.668 kb on + strand, within Dsui_0759at 759.676 kb on - strand, within Dsui_0759at 759.713 kb on + strand, within Dsui_0759at 759.713 kb on + strand, within Dsui_0759at 759.728 kb on + strand, within Dsui_0759at 759.812 kb on - strand, within Dsui_0759at 759.837 kb on + strand, within Dsui_0759at 759.845 kb on - strand, within Dsui_0759at 759.878 kb on - strand, within Dsui_0759at 759.929 kb on + strand, within Dsui_0759at 759.939 kb on + strand, within Dsui_0759at 759.986 kb on + strand, within Dsui_0759at 760.004 kb on - strand, within Dsui_0759at 760.107 kb on + strandat 760.115 kb on - strandat 760.148 kb on + strandat 760.150 kb on - strandat 760.171 kb on - strandat 760.189 kb on - strandat 760.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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756,359 - Dsui_0757 0.31 -0.1
756,384 + Dsui_0757 0.33 +0.4
756,394 + Dsui_0757 0.34 +0.4
756,438 - Dsui_0757 0.38 +3.0
756,452 + +0.4
756,462 + +0.4
756,481 - Dsui_0757 0.41 -1.2
756,509 - Dsui_0757 0.43 -0.0
756,574 - Dsui_0757 0.49 -0.4
756,589 - Dsui_0757 0.50 -1.1
756,607 + Dsui_0757 0.52 -1.9
756,626 + Dsui_0757 0.53 +0.4
756,634 - Dsui_0757 0.54 +0.1
756,647 + Dsui_0757 0.55 -0.2
756,647 + Dsui_0757 0.55 -1.1
756,647 + Dsui_0757 0.55 +0.4
756,655 - Dsui_0757 0.56 +0.7
756,706 + Dsui_0757 0.60 +0.4
756,706 + Dsui_0757 0.60 -0.6
756,711 + Dsui_0757 0.60 +0.4
756,801 - +0.4
756,908 + Dsui_0757 0.77 -1.6
756,996 + Dsui_0757 0.84 +0.4
757,007 + +0.4
757,007 + Dsui_0757 0.85 -2.7
757,015 - Dsui_0757 0.85 -0.4
757,061 - Dsui_0757 0.89 -0.6
757,063 - Dsui_0757 0.89 +0.4
757,070 + -0.6
757,083 - +0.4
757,137 - -0.5
757,198 + -1.6
757,198 + +0.4
757,206 - -0.3
757,211 - -0.3
757,215 - -0.3
757,217 + +0.4
757,330 + -0.7
757,420 - -1.0
757,517 - -0.6
757,603 - Dsui_0758 0.14 -0.6
757,607 + Dsui_0758 0.14 -0.2
757,631 - Dsui_0758 0.16 -3.8
757,710 + Dsui_0758 0.20 -1.8
757,736 + Dsui_0758 0.21 -0.3
757,776 + Dsui_0758 0.23 -0.1
757,807 + Dsui_0758 0.25 -0.8
757,840 - Dsui_0758 0.27 +0.4
757,876 - +0.4
757,973 + Dsui_0758 0.34 -0.2
757,981 - Dsui_0758 0.34 -0.6
757,995 + Dsui_0758 0.35 -0.5
758,007 + Dsui_0758 0.35 +0.3
758,007 + Dsui_0758 0.35 +0.2
758,068 - Dsui_0758 0.39 +0.4
758,176 + Dsui_0758 0.44 -0.1
758,312 + Dsui_0758 0.51 -0.2
758,315 - Dsui_0758 0.52 -2.1
758,392 - Dsui_0758 0.56 +0.4
758,430 - Dsui_0758 0.58 -1.1
758,621 - +0.4
758,658 - +0.4
758,768 + Dsui_0758 0.75 -0.7
758,827 - Dsui_0758 0.78 -2.7
758,890 + Dsui_0758 0.82 -0.6
758,921 + Dsui_0758 0.83 -0.2
758,929 - -0.6
759,040 + Dsui_0758 0.90 -0.2
759,094 - -3.4
759,110 + -1.5
759,167 - -1.6
759,207 - -0.6
759,268 + +0.1
759,294 - +0.4
759,380 - +0.4
759,387 + Dsui_0759 0.10 -0.1
759,418 - Dsui_0759 0.14 -1.1
759,428 + Dsui_0759 0.15 -0.1
759,454 - Dsui_0759 0.18 -0.6
759,471 - Dsui_0759 0.20 -2.6
759,509 + Dsui_0759 0.25 -0.5
759,516 - Dsui_0759 0.26 -0.6
759,565 - Dsui_0759 0.32 -2.4
759,607 - Dsui_0759 0.37 -1.1
759,665 - Dsui_0759 0.43 -2.7
759,668 + Dsui_0759 0.44 +0.2
759,676 - Dsui_0759 0.45 -0.6
759,713 + Dsui_0759 0.49 +0.1
759,713 + Dsui_0759 0.49 -0.3
759,728 + Dsui_0759 0.51 -0.6
759,812 - Dsui_0759 0.61 -1.6
759,837 + Dsui_0759 0.64 -0.1
759,845 - Dsui_0759 0.65 -0.6
759,878 - Dsui_0759 0.69 +0.4
759,929 + Dsui_0759 0.75 -1.0
759,939 + Dsui_0759 0.76 -0.6
759,986 + Dsui_0759 0.82 -0.7
760,004 - Dsui_0759 0.84 +0.4
760,107 + -0.2
760,115 - +0.4
760,148 + -0.1
760,150 - +0.4
760,171 - -1.1
760,189 - -1.9
760,225 + -0.7

Or see this region's nucleotide sequence