Strain Fitness in Dechlorosoma suillum PS around Dsui_0730

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0729 and Dsui_0730 are separated by 84 nucleotidesDsui_0730 and Dsui_0731 are separated by 18 nucleotidesDsui_0731 and Dsui_0732 are separated by 12 nucleotides Dsui_0729: Dsui_0729 - putative autotransporter protein,putative Ig domain-containing protein, at 723,897 to 728,669 _0729 Dsui_0730: Dsui_0730 - microcystin-dependent protein, at 728,754 to 729,293 _0730 Dsui_0731: Dsui_0731 - microcystin-dependent protein, at 729,312 to 729,833 _0731 Dsui_0732: Dsui_0732 - microcystin-dependent protein, at 729,846 to 730,379 _0732 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1at 727.863 kb on - strand, within Dsui_0729at 727.879 kb on - strandat 727.958 kb on + strand, within Dsui_0729at 728.083 kb on - strand, within Dsui_0729at 728.098 kb on - strandat 728.099 kb on - strand, within Dsui_0729at 728.099 kb on - strand, within Dsui_0729at 728.099 kb on - strand, within Dsui_0729at 728.107 kb on - strand, within Dsui_0729at 728.170 kb on + strand, within Dsui_0729at 728.178 kb on - strand, within Dsui_0729at 728.179 kb on - strandat 728.179 kb on - strandat 728.221 kb on + strandat 728.266 kb on + strandat 728.308 kb on + strandat 728.413 kb on - strandat 728.449 kb on + strandat 728.474 kb on + strandat 728.474 kb on + strandat 728.475 kb on + strandat 728.475 kb on + strandat 728.476 kb on - strandat 728.482 kb on - strandat 728.482 kb on - strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.505 kb on + strandat 728.509 kb on - strandat 728.509 kb on - strandat 728.520 kb on + strandat 728.584 kb on - strandat 728.648 kb on + strandat 728.671 kb on + strandat 728.675 kb on + strandat 728.679 kb on - strandat 728.734 kb on + strandat 728.752 kb on + strandat 728.760 kb on - strandat 728.892 kb on + strand, within Dsui_0730at 728.938 kb on + strand, within Dsui_0730at 728.963 kb on + strand, within Dsui_0730at 728.971 kb on - strand, within Dsui_0730at 728.987 kb on + strand, within Dsui_0730at 728.998 kb on + strand, within Dsui_0730at 729.157 kb on + strand, within Dsui_0730at 729.165 kb on - strand, within Dsui_0730at 729.297 kb on - strandat 729.346 kb on - strandat 729.381 kb on + strand, within Dsui_0731at 729.393 kb on + strand, within Dsui_0731at 729.412 kb on - strand, within Dsui_0731at 729.426 kb on + strand, within Dsui_0731at 729.435 kb on + strand, within Dsui_0731at 729.440 kb on + strand, within Dsui_0731at 729.547 kb on - strand, within Dsui_0731at 729.553 kb on + strand, within Dsui_0731at 729.591 kb on - strand, within Dsui_0731at 729.616 kb on - strand, within Dsui_0731at 729.632 kb on - strand, within Dsui_0731at 729.656 kb on - strand, within Dsui_0731at 729.663 kb on - strand, within Dsui_0731at 729.728 kb on - strand, within Dsui_0731at 729.760 kb on - strand, within Dsui_0731at 729.772 kb on + strand, within Dsui_0731at 729.777 kb on + strand, within Dsui_0731at 729.837 kb on + strandat 729.906 kb on - strand, within Dsui_0732at 730.012 kb on + strand, within Dsui_0732at 730.020 kb on - strand, within Dsui_0732at 730.097 kb on + strand, within Dsui_0732at 730.131 kb on + strandat 730.134 kb on - strand, within Dsui_0732at 730.152 kb on + strand, within Dsui_0732at 730.152 kb on + strand, within Dsui_0732at 730.160 kb on - strand, within Dsui_0732at 730.196 kb on - strand, within Dsui_0732at 730.204 kb on - strand, within Dsui_0732at 730.211 kb on + strand, within Dsui_0732at 730.219 kb on - strand, within Dsui_0732at 730.223 kb on - strand, within Dsui_0732

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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727,863 - Dsui_0729 0.83 +0.4
727,879 - +0.4
727,958 + Dsui_0729 0.85 -1.9
728,083 - Dsui_0729 0.88 +0.4
728,098 - -1.6
728,099 - Dsui_0729 0.88 +0.4
728,099 - Dsui_0729 0.88 -1.2
728,099 - Dsui_0729 0.88 -1.9
728,107 - Dsui_0729 0.88 +0.4
728,170 + Dsui_0729 0.90 -0.6
728,178 - Dsui_0729 0.90 -0.6
728,179 - +0.4
728,179 - +0.4
728,221 + +0.4
728,266 + +0.4
728,308 + +0.4
728,413 - -0.6
728,449 + +0.4
728,474 + +0.4
728,474 + -0.6
728,475 + -1.9
728,475 + -1.2
728,476 - +0.4
728,482 - -1.6
728,482 - +0.4
728,501 + +0.4
728,501 + -0.6
728,501 + -0.6
728,501 + +0.4
728,505 + +0.4
728,509 - -1.6
728,509 - -1.2
728,520 + +0.4
728,584 - -0.6
728,648 + +0.4
728,671 + +0.4
728,675 + +0.4
728,679 - +0.4
728,734 + -1.6
728,752 + -0.6
728,760 - -0.6
728,892 + Dsui_0730 0.26 -0.6
728,938 + Dsui_0730 0.34 -1.6
728,963 + Dsui_0730 0.39 +0.4
728,971 - Dsui_0730 0.40 -1.2
728,987 + Dsui_0730 0.43 -0.6
728,998 + Dsui_0730 0.45 +0.4
729,157 + Dsui_0730 0.75 -1.6
729,165 - Dsui_0730 0.76 +0.4
729,297 - +0.4
729,346 - +0.4
729,381 + Dsui_0731 0.13 -0.6
729,393 + Dsui_0731 0.16 +0.4
729,412 - Dsui_0731 0.19 -2.2
729,426 + Dsui_0731 0.22 +0.4
729,435 + Dsui_0731 0.24 -0.6
729,440 + Dsui_0731 0.25 -2.2
729,547 - Dsui_0731 0.45 +0.4
729,553 + Dsui_0731 0.46 +0.4
729,591 - Dsui_0731 0.53 -0.6
729,616 - Dsui_0731 0.58 -1.6
729,632 - Dsui_0731 0.61 -1.2
729,656 - Dsui_0731 0.66 -0.6
729,663 - Dsui_0731 0.67 -0.6
729,728 - Dsui_0731 0.80 +0.4
729,760 - Dsui_0731 0.86 -0.6
729,772 + Dsui_0731 0.88 -1.9
729,777 + Dsui_0731 0.89 +0.4
729,837 + +0.4
729,906 - Dsui_0732 0.11 +0.4
730,012 + Dsui_0732 0.31 +0.4
730,020 - Dsui_0732 0.33 +0.4
730,097 + Dsui_0732 0.47 -1.6
730,131 + -1.2
730,134 - Dsui_0732 0.54 -0.6
730,152 + Dsui_0732 0.57 -0.6
730,152 + Dsui_0732 0.57 -0.6
730,160 - Dsui_0732 0.59 +0.4
730,196 - Dsui_0732 0.66 -1.6
730,204 - Dsui_0732 0.67 +0.4
730,211 + Dsui_0732 0.68 +0.4
730,219 - Dsui_0732 0.70 -1.6
730,223 - Dsui_0732 0.71 -0.6

Or see this region's nucleotide sequence