Experiment: ALP with nitrite 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0689 and Dsui_0690 are separated by 72 nucleotides Dsui_0690 and Dsui_0691 are separated by 160 nucleotides Dsui_0691 and Dsui_0692 are separated by 17 nucleotides Dsui_0692 and Dsui_0693 are separated by 82 nucleotides
Dsui_0689: Dsui_0689 - lysophospholipase, at 686,125 to 686,937
_0689
Dsui_0690: Dsui_0690 - hypothetical protein, at 687,010 to 687,204
_0690
Dsui_0691: Dsui_0691 - hypothetical protein, at 687,365 to 687,562
_0691
Dsui_0692: Dsui_0692 - hypothetical protein, at 687,580 to 688,434
_0692
Dsui_0693: Dsui_0693 - hypothetical protein, at 688,517 to 689,674
_0693
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 686.588 kb on - strand, within Dsui_0689 at 686.797 kb on + strand, within Dsui_0689 at 686.905 kb on + strand at 686.925 kb on - strand at 686.998 kb on + strand at 687.016 kb on - strand at 687.028 kb on - strand at 687.051 kb on + strand, within Dsui_0690 at 687.059 kb on - strand, within Dsui_0690 at 687.069 kb on - strand, within Dsui_0690 at 687.095 kb on + strand, within Dsui_0690 at 687.110 kb on + strand, within Dsui_0690 at 687.129 kb on - strand, within Dsui_0690 at 687.144 kb on + strand at 687.159 kb on - strand, within Dsui_0690 at 687.214 kb on - strand at 687.288 kb on + strand at 687.294 kb on + strand at 687.311 kb on + strand at 687.311 kb on + strand at 687.311 kb on + strand at 687.311 kb on + strand at 687.311 kb on + strand at 687.319 kb on - strand at 687.319 kb on - strand at 687.342 kb on + strand at 687.348 kb on - strand at 687.386 kb on + strand, within Dsui_0691 at 687.466 kb on + strand, within Dsui_0691 at 687.539 kb on - strand, within Dsui_0691 at 687.556 kb on + strand at 687.581 kb on - strand at 687.647 kb on + strand at 687.655 kb on - strand at 687.716 kb on - strand, within Dsui_0692 at 687.748 kb on - strand at 687.756 kb on + strand, within Dsui_0692 at 687.786 kb on + strand, within Dsui_0692 at 687.856 kb on - strand, within Dsui_0692 at 687.873 kb on - strand, within Dsui_0692 at 687.965 kb on + strand, within Dsui_0692 at 688.002 kb on + strand at 688.084 kb on + strand, within Dsui_0692 at 688.093 kb on - strand, within Dsui_0692 at 688.144 kb on + strand, within Dsui_0692 at 688.171 kb on + strand at 688.194 kb on - strand, within Dsui_0692 at 688.286 kb on + strand, within Dsui_0692 at 688.294 kb on - strand, within Dsui_0692 at 688.316 kb on + strand, within Dsui_0692 at 688.348 kb on - strand, within Dsui_0692 at 688.397 kb on - strand at 688.425 kb on - strand at 688.467 kb on + strand at 688.522 kb on + strand at 688.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM remove 686,588 - Dsui_0689 0.57 -1.2 686,797 + Dsui_0689 0.83 -1.2 686,905 + -0.1 686,925 - -2.2 686,998 + -2.6 687,016 - +0.8 687,028 - +0.6 687,051 + Dsui_0690 0.21 -1.2 687,059 - Dsui_0690 0.25 -0.2 687,069 - Dsui_0690 0.30 +0.1 687,095 + Dsui_0690 0.44 -2.0 687,110 + Dsui_0690 0.51 -0.6 687,129 - Dsui_0690 0.61 +0.1 687,144 + +0.4 687,159 - Dsui_0690 0.76 -0.0 687,214 - -0.1 687,288 + -1.2 687,294 + +1.0 687,311 + -1.6 687,311 + -0.6 687,311 + +0.4 687,311 + +0.4 687,311 + -0.6 687,319 - -0.6 687,319 - -2.2 687,342 + +0.4 687,348 - -0.6 687,386 + Dsui_0691 0.11 +1.4 687,466 + Dsui_0691 0.51 +0.4 687,539 - Dsui_0691 0.88 -2.2 687,556 + +0.4 687,581 - -1.4 687,647 + +0.4 687,655 - +0.4 687,716 - Dsui_0692 0.16 +0.4 687,748 - +0.4 687,756 + Dsui_0692 0.21 -1.2 687,786 + Dsui_0692 0.24 -0.2 687,856 - Dsui_0692 0.32 +0.4 687,873 - Dsui_0692 0.34 -1.6 687,965 + Dsui_0692 0.45 +0.4 688,002 + -0.6 688,084 + Dsui_0692 0.59 +0.4 688,093 - Dsui_0692 0.60 -1.9 688,144 + Dsui_0692 0.66 -1.6 688,171 + +0.4 688,194 - Dsui_0692 0.72 +2.4 688,286 + Dsui_0692 0.83 -3.1 688,294 - Dsui_0692 0.84 -2.2 688,316 + Dsui_0692 0.86 -1.9 688,348 - Dsui_0692 0.90 -2.4 688,397 - -0.8 688,425 - -0.0 688,467 + -0.6 688,522 + +0.4 688,524 - +0.6
Or see this region's nucleotide sequence