Strain Fitness in Dechlorosoma suillum PS around Dsui_0668

Experiment: ALP with nitrite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0666 and Dsui_0667 are separated by 305 nucleotidesDsui_0667 and Dsui_0668 are separated by 186 nucleotidesDsui_0668 and Dsui_0669 overlap by 8 nucleotidesDsui_0669 and Dsui_0671 are separated by 779 nucleotides Dsui_0666: Dsui_0666 - Na+/proline symporter, at 663,434 to 664,936 _0666 Dsui_0667: Dsui_0667 - hypothetical protein, at 665,242 to 665,448 _0667 Dsui_0668: Dsui_0668 - putative membrane protein, at 665,635 to 668,355 _0668 Dsui_0669: Dsui_0669 - hypothetical protein, at 668,348 to 668,509 _0669 Dsui_0671: Dsui_0671 - arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase, at 669,289 to 670,167 _0671 Position (kb) 665 666 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1at 664.724 kb on + strand, within Dsui_0666at 664.732 kb on - strand, within Dsui_0666at 664.919 kb on + strandat 664.919 kb on + strandat 664.937 kb on + strandat 664.984 kb on + strandat 664.984 kb on + strandat 664.989 kb on + strandat 664.989 kb on + strandat 664.992 kb on - strandat 665.027 kb on - strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.086 kb on + strandat 665.087 kb on + strandat 665.087 kb on + strandat 665.092 kb on + strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.094 kb on - strandat 665.095 kb on - strandat 665.095 kb on - strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.097 kb on + strandat 665.100 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.105 kb on - strandat 665.110 kb on + strandat 665.118 kb on - strandat 665.134 kb on + strandat 665.134 kb on + strandat 665.142 kb on - strandat 665.148 kb on - strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strandat 665.266 kb on + strand, within Dsui_0667at 665.266 kb on + strand, within Dsui_0667at 665.313 kb on + strandat 665.313 kb on + strand, within Dsui_0667at 665.313 kb on + strand, within Dsui_0667at 665.330 kb on + strand, within Dsui_0667at 665.333 kb on - strand, within Dsui_0667at 665.371 kb on - strand, within Dsui_0667at 665.446 kb on + strandat 665.504 kb on - strandat 665.530 kb on - strandat 665.536 kb on - strandat 665.685 kb on - strandat 665.685 kb on - strandat 665.703 kb on - strandat 665.822 kb on - strandat 666.025 kb on - strand, within Dsui_0668at 666.025 kb on - strand, within Dsui_0668at 666.031 kb on - strand, within Dsui_0668at 666.110 kb on + strand, within Dsui_0668at 666.118 kb on - strandat 666.133 kb on + strand, within Dsui_0668at 666.252 kb on - strand, within Dsui_0668at 666.253 kb on + strand, within Dsui_0668at 666.283 kb on - strand, within Dsui_0668at 666.284 kb on - strand, within Dsui_0668at 666.284 kb on - strand, within Dsui_0668at 666.314 kb on - strand, within Dsui_0668at 666.314 kb on - strand, within Dsui_0668at 666.336 kb on - strand, within Dsui_0668at 666.496 kb on - strand, within Dsui_0668at 666.498 kb on + strand, within Dsui_0668at 666.506 kb on - strand, within Dsui_0668at 666.506 kb on - strand, within Dsui_0668at 666.510 kb on + strand, within Dsui_0668at 666.588 kb on + strand, within Dsui_0668at 666.613 kb on + strand, within Dsui_0668at 666.665 kb on + strand, within Dsui_0668at 666.696 kb on - strand, within Dsui_0668at 666.696 kb on - strand, within Dsui_0668at 666.705 kb on + strand, within Dsui_0668at 666.805 kb on + strand, within Dsui_0668at 666.812 kb on - strand, within Dsui_0668at 666.901 kb on + strand, within Dsui_0668at 666.935 kb on + strand, within Dsui_0668at 666.943 kb on - strandat 667.013 kb on - strand, within Dsui_0668at 667.097 kb on + strand, within Dsui_0668at 667.233 kb on - strand, within Dsui_0668at 667.264 kb on - strand, within Dsui_0668at 667.306 kb on + strand, within Dsui_0668at 667.346 kb on + strand, within Dsui_0668at 667.349 kb on - strand, within Dsui_0668at 667.351 kb on + strand, within Dsui_0668at 667.381 kb on - strand, within Dsui_0668at 667.480 kb on + strand, within Dsui_0668at 667.480 kb on + strand, within Dsui_0668at 667.499 kb on - strand, within Dsui_0668at 667.499 kb on - strand, within Dsui_0668at 667.513 kb on + strandat 667.513 kb on + strand, within Dsui_0668at 667.582 kb on + strand, within Dsui_0668at 667.692 kb on + strand, within Dsui_0668at 667.722 kb on + strand, within Dsui_0668at 667.760 kb on + strand, within Dsui_0668at 667.798 kb on + strand, within Dsui_0668at 667.829 kb on + strand, within Dsui_0668at 667.847 kb on + strand, within Dsui_0668at 667.855 kb on - strand, within Dsui_0668at 667.861 kb on - strand, within Dsui_0668at 667.920 kb on - strand, within Dsui_0668at 668.067 kb on + strand, within Dsui_0668at 668.075 kb on - strand, within Dsui_0668at 668.086 kb on - strandat 668.181 kb on + strandat 668.181 kb on + strandat 668.210 kb on - strandat 668.326 kb on - strandat 668.338 kb on - strandat 668.372 kb on - strand, within Dsui_0669at 668.387 kb on + strand, within Dsui_0669at 668.402 kb on + strand, within Dsui_0669at 668.412 kb on + strand, within Dsui_0669at 668.431 kb on - strand, within Dsui_0669at 668.499 kb on + strandat 668.606 kb on + strandat 668.660 kb on - strandat 668.660 kb on - strandat 668.702 kb on - strandat 668.705 kb on + strandat 668.705 kb on + strandat 668.713 kb on - strandat 668.713 kb on - strandat 668.941 kb on + strandat 668.968 kb on - strandat 669.067 kb on + strandat 669.149 kb on + strandat 669.155 kb on - strandat 669.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with nitrite 0.3 mM
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664,724 + Dsui_0666 0.86 +0.4
664,732 - Dsui_0666 0.86 -0.1
664,919 + -0.6
664,919 + -1.2
664,937 + +0.4
664,984 + +0.4
664,984 + +0.4
664,989 + +1.4
664,989 + -1.2
664,992 - -0.3
665,027 - +0.4
665,086 + -0.6
665,086 + +0.4
665,086 + -0.6
665,087 + +0.4
665,087 + +0.4
665,092 + -1.2
665,094 - +0.4
665,094 - -0.6
665,094 - -1.6
665,095 - -0.6
665,095 - -0.6
665,097 + -3.2
665,097 + -0.6
665,097 + -0.6
665,100 - -1.2
665,105 - +0.4
665,105 - -1.2
665,105 - +0.4
665,110 + -0.6
665,118 - -0.6
665,134 + -0.6
665,134 + +0.4
665,142 - -1.6
665,148 - -0.6
665,266 + Dsui_0667 0.12 -1.2
665,266 + -0.6
665,266 + Dsui_0667 0.12 +0.4
665,266 + Dsui_0667 0.12 +0.4
665,313 + -1.2
665,313 + Dsui_0667 0.34 -1.2
665,313 + Dsui_0667 0.34 -0.6
665,330 + Dsui_0667 0.43 -0.6
665,333 - Dsui_0667 0.44 -1.2
665,371 - Dsui_0667 0.62 +0.4
665,446 + +0.4
665,504 - -0.6
665,530 - -0.6
665,536 - -1.2
665,685 - -0.6
665,685 - +0.4
665,703 - -0.6
665,822 - -1.6
666,025 - Dsui_0668 0.14 -1.2
666,025 - Dsui_0668 0.14 -0.6
666,031 - Dsui_0668 0.15 +0.4
666,110 + Dsui_0668 0.17 +0.4
666,118 - +0.4
666,133 + Dsui_0668 0.18 -0.6
666,252 - Dsui_0668 0.23 -2.2
666,253 + Dsui_0668 0.23 -0.6
666,283 - Dsui_0668 0.24 +0.4
666,284 - Dsui_0668 0.24 -0.6
666,284 - Dsui_0668 0.24 +0.4
666,314 - Dsui_0668 0.25 +0.4
666,314 - Dsui_0668 0.25 +0.4
666,336 - Dsui_0668 0.26 -1.2
666,496 - Dsui_0668 0.32 -1.2
666,498 + Dsui_0668 0.32 -0.6
666,506 - Dsui_0668 0.32 -1.2
666,506 - Dsui_0668 0.32 -0.6
666,510 + Dsui_0668 0.32 -1.2
666,588 + Dsui_0668 0.35 -2.4
666,613 + Dsui_0668 0.36 -1.6
666,665 + Dsui_0668 0.38 -0.6
666,696 - Dsui_0668 0.39 +0.4
666,696 - Dsui_0668 0.39 -1.9
666,705 + Dsui_0668 0.39 +0.4
666,805 + Dsui_0668 0.43 -1.2
666,812 - Dsui_0668 0.43 +0.4
666,901 + Dsui_0668 0.47 -1.2
666,935 + Dsui_0668 0.48 -0.6
666,943 - -0.6
667,013 - Dsui_0668 0.51 +0.4
667,097 + Dsui_0668 0.54 +0.4
667,233 - Dsui_0668 0.59 -2.6
667,264 - Dsui_0668 0.60 -0.6
667,306 + Dsui_0668 0.61 -0.6
667,346 + Dsui_0668 0.63 +0.4
667,349 - Dsui_0668 0.63 +0.4
667,351 + Dsui_0668 0.63 -0.6
667,381 - Dsui_0668 0.64 +0.4
667,480 + Dsui_0668 0.68 -2.4
667,480 + Dsui_0668 0.68 +0.4
667,499 - Dsui_0668 0.69 +0.4
667,499 - Dsui_0668 0.69 +0.4
667,513 + +0.4
667,513 + Dsui_0668 0.69 -0.6
667,582 + Dsui_0668 0.72 +0.4
667,692 + Dsui_0668 0.76 -1.6
667,722 + Dsui_0668 0.77 -1.6
667,760 + Dsui_0668 0.78 +0.4
667,798 + Dsui_0668 0.79 +0.4
667,829 + Dsui_0668 0.81 -0.6
667,847 + Dsui_0668 0.81 -0.6
667,855 - Dsui_0668 0.82 -2.0
667,861 - Dsui_0668 0.82 -0.6
667,920 - Dsui_0668 0.84 -0.2
668,067 + Dsui_0668 0.89 +0.4
668,075 - Dsui_0668 0.90 -1.9
668,086 - -1.4
668,181 + -3.0
668,181 + -1.9
668,210 - +1.0
668,326 - -0.2
668,338 - -0.4
668,372 - Dsui_0669 0.15 +0.4
668,387 + Dsui_0669 0.24 -0.6
668,402 + Dsui_0669 0.33 +0.4
668,412 + Dsui_0669 0.40 -0.6
668,431 - Dsui_0669 0.51 +0.1
668,499 + -1.2
668,606 + -2.2
668,660 - -0.2
668,660 - -0.3
668,702 - +0.1
668,705 + -0.6
668,705 + -2.2
668,713 - -0.5
668,713 - +0.0
668,941 + +0.4
668,968 - -0.4
669,067 + -0.6
669,149 + +0.4
669,155 - -1.2
669,168 + -2.6

Or see this region's nucleotide sequence